Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002824-TA|BGIBMGA002824-PA|IPR000203|GPS,
IPR000832|GPCR, family 2, secretin-like, IPR000215|Proteinase
inhibitor I4, serpin
(1228 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 32 3.3
01_06_0453 + 29501600-29502403 32 3.3
12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339... 31 5.7
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 31 5.7
04_03_0091 - 11043023-11043090,11043458-11043566,11044431-110445... 31 5.7
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842... 31 7.6
10_08_0427 + 17828007-17828570,17829788-17829904,17830319-178303... 31 7.6
01_06_0582 + 30392297-30392677,30393786-30394039,30394175-303942... 31 7.6
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 31 7.6
>05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 31.9 bits (69), Expect = 3.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 1121 LVFLFGLPWVFGLFLNNIVTVYLFNLTATFQGFV 1154
L++ FG PW+FGLFL+ ++ + L+ FV
Sbjct: 826 LIYTFGGPWLFGLFLSGLLFLLALVLSIARMKFV 859
>01_06_0453 + 29501600-29502403
Length = 267
Score = 31.9 bits (69), Expect = 3.3
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 1056 DVRSGAFCYPSGLSLWLTVYAPIAVMLLVNWTLFLLIVRSVFASRRIQRHGDSN 1109
DV + A +P G SL ++P + LL+N + + + S + RR Q H D +
Sbjct: 2 DVAADATAWPPGWSLVRGYFSPATLFLLLNVVIGTIALTSRASHRRRQHHHDEH 55
>12_02_0952 -
24731799-24731901,24732169-24732231,24732941-24733980,
24734094-24734339
Length = 483
Score = 31.1 bits (67), Expect = 5.7
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 340 HDEENTYVVQEKKNGYYWCIHTDSKSYTI 368
+D+ N +++++K NG YW I D ++ +
Sbjct: 339 YDKANNFLLEDKGNGLYWMIEVDMRNQAL 367
>10_08_0509 + 18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 31.1 bits (67), Expect = 5.7
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 1055 GDVRSGAFCYP-SGLSLWLTVYAPIAVMLLVNWTLFLLIVRSVFASRRIQRHGDSNEALR 1113
GD G C+P G+S L P A L +W +VRS FA+ + GDS +AL
Sbjct: 1050 GDRGRGVECHPHQGVSAALLRPGPQA--LAASWRRRETVVRSDFAAGGVATMGDSPQALS 1107
Query: 1114 ---CASVSCLLVFLFGLPWVFGLFLNN 1137
C S + V+ G W F N
Sbjct: 1108 DRLCGSAT--KVWRGGAEWTAEAFARN 1132
>04_03_0091 -
11043023-11043090,11043458-11043566,11044431-11044577,
11044678-11044776,11044857-11044982,11045448-11045582,
11046391-11046468,11046553-11046678,11046828-11046968
Length = 342
Score = 31.1 bits (67), Expect = 5.7
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 151 DEKALKSQPCAGFDNGYRFYSPMPTCLAEVPAVGEAAVRATWKQAKNICEKRGGYLLN 208
DE+ L+SQ CA + +R ++ +P A G + +K K I E GG+ N
Sbjct: 73 DERVLESQACADDNELHRMHTWLPDGWAIEVRAGGKKMEKMYKDRKRIPEITGGFEQN 130
>12_02_0947 +
24680119-24681497,24682213-24682275,24683380-24684239,
24684399-24684772,24685932-24686112,24686201-24686220
Length = 958
Score = 30.7 bits (66), Expect = 7.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 340 HDEENTYVVQEKKNGYYWCIHTDSKS 365
+D+ N +++++K NG YW I D ++
Sbjct: 372 YDKANNFLLEDKGNGLYWMIEVDMRN 397
>10_08_0427 +
17828007-17828570,17829788-17829904,17830319-17830384,
17831466-17831572,17831939-17832017,17832861-17833574,
17834040-17834148,17834263-17834429,17834876-17834950,
17835025-17835117,17835202-17835294
Length = 727
Score = 30.7 bits (66), Expect = 7.6
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 680 VSLETISSSFDQVDGLLSEDDDLDIPGELLHLLDNIGPRLNLDGSDAATVRENIALVVAK 739
V+ + I FDQ+ EDD+ D P + + ++IG N++ ++AA+ +N V
Sbjct: 399 VNQDYIIKIFDQMS---DEDDENDNPEDEIESSEDIGDGDNVEEAEAASAEDN---VDES 452
Query: 740 GDES 743
GDES
Sbjct: 453 GDES 456
>01_06_0582 + 30392297-30392677,30393786-30394039,30394175-30394298,
30394484-30394588,30395913-30396035
Length = 328
Score = 30.7 bits (66), Expect = 7.6
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 1113 RCASVSCLLVFLFGLPWVF-GLFLNNIVTVYLFNLTATFQGF------VLFLFFVPGNKK 1165
R A+VS L +F+ G P + GL + YL T T++ F ++ +FV G
Sbjct: 73 RSAAVSNLAIFVAGSPVLLSGLSASGFAAAYLLG-TLTWRAFGPKGLVLVASYFVLGTAA 131
Query: 1166 TRDLWLNKLKIKQTRKVPVTSSTYTNRSTGGNPGS 1200
T KLKIKQ + V R TG GS
Sbjct: 132 T------KLKIKQKEALGVAEKRGGRRGTGSVIGS 160
>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 30.7 bits (66), Expect = 7.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 1121 LVFLFGLPWVFGLFLNNIVTVYLFNLTATFQGFV 1154
L++ FG PW+FGL L+ ++ + L+ FV
Sbjct: 864 LIYTFGGPWLFGLLLSGLLVLLALVLSVARMKFV 897
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,456,556
Number of Sequences: 37544
Number of extensions: 1416872
Number of successful extensions: 2992
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2986
Number of HSP's gapped (non-prelim): 9
length of query: 1228
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1138
effective length of database: 11,414,388
effective search space: 12989573544
effective search space used: 12989573544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 66 (30.7 bits)
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