GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002824-TA|BGIBMGA002824-PA|IPR000203|GPS,
IPR000832|GPCR, family 2, secretin-like, IPR000215|Proteinase
inhibitor I4, serpin
         (1228 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    38   7e-04
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                28   0.54 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.71 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.94 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   2.9  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   8.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    24   8.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
            protein.
          Length = 501

 Score = 37.5 bits (83), Expect = 7e-04
 Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 13/203 (6%)

Query: 915  ALELISVIGCCV--SILGLVLVAITAILFRSWRRD----FTNKIWLQLCLAIFITSVCFL 968
            A+ +  V+G  +  +++G +LV +   L R  RR       +     LC+A+ +  +  L
Sbjct: 41   AILIALVLGSIIVGTVIGNILVCVAVFLVRKLRRPCNYLLVSLAVSDLCVALLVMPMALL 100

Query: 969  VIVFADFLEYNIACML---VGVLLHYAVLASFCWMLVAAIISYRKLVIVFSRDASHKLLK 1025
              +  ++    I C L     VL   A + + C + V    +  K +    +    +++ 
Sbjct: 101  YEISGNWSFGTIMCDLWVSFDVLSCTASILNLCMISVDRFCAITKPLKYGVKRTPRRMIV 160

Query: 1026 ASAFSW-GAPCAVVGVLLSVA-PHSYAGQFDGD-VRSGAFCYPSGLSLWLTVYAPIAVML 1082
              +  W GA C  +  LL +   H+Y+       V    F Y    +L  + Y P+ VM+
Sbjct: 161  YVSLVWLGAACISLPPLLIMGNEHTYSETGPSHCVVCQNFFYQIYATLG-SFYIPLFVMI 219

Query: 1083 LVNWTLFLLIVRSVFASRRIQRH 1105
             V + +F    R V   RR Q H
Sbjct: 220  QVYYKIFCAARRIVLEERRAQSH 242


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 0.54
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 401 KIYKALEKLEEYIYLS--TKYFNVHGNDAATEDQLRSFELTTPS 442
           +I   + K ++ IYLS  T   NV+ N+  T++QL  F + TP+
Sbjct: 13  RISPQILKNDKRIYLSPRTPIKNVYKNNIETKNQLSPFNIDTPN 56


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 918 LISVIGCCVSILGLVLVAITAILFRSWRRDFTNKIWLQLCLAIFITSVCFLVIVFADFLE 977
           LI VI  C+++ G VLV +  +  R+  +  TN   + L +A  + +V  LV+ FA ++ 
Sbjct: 191 LILVIVPCLTLFGNVLVILAVVRERA-LQTVTNYFIVSLAVADLLVAV--LVMPFAVYVL 247

Query: 978 YNIACMLVGVLLHYAV 993
            N +  L G +  + +
Sbjct: 248 VNGSWSLPGFVCDFYI 263


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 1177 KQTRKVPVTSSTYTNRSTG-GNPGSRVGNTSVPAQS 1211
            KQ  +VP+TSS+  N ++G GN  S   ++S   +S
Sbjct: 525  KQQNQVPLTSSSNVNNNSGNGNTNSSARDSSPAIES 560


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 126 DSITSFTAVSCEAMHHRYCLVYPYEDEKALKSQPCAGFDNGYR 168
           D + S   V  E + +  CL+ PY D      + C+G  + Y+
Sbjct: 88  DGVPSSLNVISEKIGNGGCLLQPYPDWSWANYKDCSGIVSAYK 130


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 265 RLSAVGNNMWFSVNSSFVFYAVICEVSVPVKDVVLNLTIDSDDRLILNVSEPVPRRYLKC 324
           RL+ + +N+ F V S F  Y    ++ + +KD +  +     D           +++ +C
Sbjct: 63  RLALMNDNV-FDV-SKFDVYLNDTDMDMDLKDSIRKIIRQCVDNAKNEDKCLTAQKFSRC 120

Query: 325 FTDSVKYYPTPVDLDHDEENTYVVQEKKN 353
             D VK++ T   + +   NT   +E  +
Sbjct: 121 VIDYVKFHITQYMISNANSNTTSEEESSD 149


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 497 PDESLESGEAKHLGESISNTRCQTRKCVG 525
           PDE L  G   +LG      +C   KC+G
Sbjct: 65  PDE-LCGGPQNYLGICAEGMQCSCNKCIG 92


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,620
Number of Sequences: 429
Number of extensions: 14635
Number of successful extensions: 51
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 8
length of query: 1228
length of database: 140,377
effective HSP length: 66
effective length of query: 1162
effective length of database: 112,063
effective search space: 130217206
effective search space used: 130217206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)