GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002823-TA|BGIBMGA002823-PA|IPR003123|Vacuolar sorting
protein 9, IPR002653|Zinc finger, A20-type, IPR013995|Vacuolar sorting
protein 9, subgroup
         (696 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    24   4.0  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   5.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   5.3  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   7.1  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 489 PPTTEPGPARTSEPPALLNEPSVVIDETEK 518
           PPT +P P + S        P+ V +E EK
Sbjct: 250 PPTPKPRPTKVSRRKPRPPRPTQVEEEEEK 279


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 576 EFPDNIPGLSDVNYDIDLSDFSADTSLA 603
           E P+++PG  D   D+DL        LA
Sbjct: 212 EDPEDVPGCEDYYGDLDLKSIRKSELLA 239


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 488 PPPTTEPGPARTSE-PPALLNEPSVVIDETEK 518
           P PT EP P +T+E  P   +E       T+K
Sbjct: 395 PVPTPEPQPTQTTESEPTQASEQPTESSTTQK 426


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 576 EFPDNIPGLSDVNYDIDL 593
           E P+++PG  D   D+DL
Sbjct: 212 EDPEDVPGCEDYYKDVDL 229


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,946
Number of Sequences: 317
Number of extensions: 6739
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 696
length of database: 114,650
effective HSP length: 62
effective length of query: 634
effective length of database: 94,996
effective search space: 60227464
effective search space used: 60227464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)