GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002823-TA|BGIBMGA002823-PA|IPR003123|Vacuolar sorting
protein 9, IPR002653|Zinc finger, A20-type, IPR013995|Vacuolar sorting
protein 9, subgroup
         (696 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical ...   141   2e-33
Z71262-2|CAA95809.1|  189|Caenorhabditis elegans Hypothetical pr...    39   0.010
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    34   0.30 
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    34   0.30 
L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical pr...    33   0.68 
AL132898-12|CAB60945.3|  576|Caenorhabditis elegans Hypothetical...    33   0.90 
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    32   1.2  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    32   1.6  
U40798-2|AAQ01525.2|  389|Caenorhabditis elegans Hypothetical pr...    32   1.6  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    32   1.6  
AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical ...    32   1.6  
Z70035-3|CAA93863.1|  435|Caenorhabditis elegans Hypothetical pr...    31   2.1  
Z83114-9|CAB05553.2|  941|Caenorhabditis elegans Hypothetical pr...    31   2.7  
Z83114-8|CAJ76944.1|  875|Caenorhabditis elegans Hypothetical pr...    31   2.7  
AL021483-8|CAI79173.1|  941|Caenorhabditis elegans Hypothetical ...    31   2.7  
Z78016-4|CAC42335.1|  359|Caenorhabditis elegans Hypothetical pr...    31   3.6  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    31   3.6  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    30   4.8  
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    30   6.4  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    30   6.4  
AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlec...    30   6.4  

>AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical
           protein Y39A1A.5 protein.
          Length = 545

 Score =  141 bits (341), Expect = 2e-33
 Identities = 123/461 (26%), Positives = 202/461 (43%), Gaps = 48/461 (10%)

Query: 5   PNLQRSYKYMITSKMPSLRIDQNDLKCKNGCDYFGNPQWQGYCSKCHREQMQRQRKAEKA 64
           P+   S K+    K   + +  NDL C NGC ++G PQW+  CSKC R      +K +  
Sbjct: 25  PHKVMSDKHGEEDKKAKMHLKANDLLCVNGCGFYGTPQWENRCSKCWRAHQNEMKKCQDF 84

Query: 65  SSFTSTLPRSDQRKSERGLKLSSHASFSKFEEKRLRQSETLKK--TNLLKFNVFKK---- 118
           +   S L                  SF +F+E+R   +E+  +   NL K +   +    
Sbjct: 85  AKNRSLL------------------SFDQFQERRKSTTESKSRGIKNLFKTSPIPEGGTS 126

Query: 119 NITDDHEISTERRQPEFKIPTAVFEGMKADFRVRFPS--FPPQIDRDARGFVHTFILDVI 176
           + T     ST  R+ E    +        DF V   S     +I R  +  V+   +  +
Sbjct: 127 SPTSTSPASTPTRRRELSPDSLEARQQFTDFLVANLSTGMAQEIARSVKNAVNK--ISEM 184

Query: 177 KWAAIMNVDELSERVQKQYQRFMKHMETSQHYASVDSDAR-ELLIDFVEKHAMTYLHELP 235
           +    M+ D++SE V   YQ   + +     + S D   + E ++D VEK+  T+ +   
Sbjct: 185 R----MSSDDMSELVMSYYQYLGERIGGHSLFDSPDCKVKVEDVMDQVEKYISTFCYS-- 238

Query: 236 SIVFSPSGTDDERQDRAMSERIQQLSWVGEKHLECKLDRNNAECRRLLYKAISELLGMDA 295
             +F  +  ++E  D ++ +RI+ L WV    LE K+       R  + +AISEL+ ++A
Sbjct: 239 --IFFCANHEEEVADMSLQDRIRSLHWVTAGFLETKMVFKKQTVRDKIDEAISELIEINA 296

Query: 296 ARWSGAKLARVRRCARHVXXXXXXXXXXXXXXXX--XXXXXXXXXNPPRLISNINYVTRF 353
            R +  KL  + +  + +                           NPP + SN+ +++RF
Sbjct: 297 KRSAFEKLDCLTKSCKAIFEALKESEASTSADEFLPTLIYVLFRGNPPLIQSNVKFISRF 356

Query: 354 CNAQRLMTGEGGYYFTNLCCAVSFIQNMTAESLSMDQKEFDCY----MAMPASIGGSAWA 409
               RLM+GE  Y+FTNL CA+ F +NM  ESL M++ EF+ Y    +A P S+  SA  
Sbjct: 357 AIPARLMSGEAAYFFTNLSCALEFARNMNHESLQMEKSEFEAYTSGHLAPPLSVINSACN 416

Query: 410 AALSLCGATRE-----AEEQSALAAKLLEQTKEIQREAENM 445
            A+ +   T E     A++  +LA  L     +   + E M
Sbjct: 417 QAIYVLEGTIETITNVAKKAGSLAKNLTNMHGKSDDDLEKM 457


>Z71262-2|CAA95809.1|  189|Caenorhabditis elegans Hypothetical
          protein F22D6.2 protein.
          Length = 189

 Score = 39.1 bits (87), Expect = 0.010
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 31 CKNGCDYFGNPQWQGYCSKCHREQMQRQRKAEKASS 66
          C+ GC +FG    +GYCS+C +  ++RQ+   + +S
Sbjct: 14 CRAGCGFFGASATEGYCSQCFKNTLKRQQDTVRLTS 49


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 34.3 bits (75), Expect = 0.30
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 486  SAPPPTTEPGPARTSEPPALLNEPSVVIDETEKLNILGFEVVEERSPSKSPQLDRLSDLK 545
            S   P  EP PA TS PP + + P VV + T     L  EV  +++PS + Q        
Sbjct: 1235 SISTPHPEPTPAITSCPPPVPSVPPVVSNGT-----LNLEVAPKQTPSATNQNVDTQHSS 1289

Query: 546  QSSSTELL---TPSPMVLTPFDCRS-LDEVLTPDEFPD 579
             ++ST  L   TP+ + +TP    + + E L  D   D
Sbjct: 1290 STASTATLVSETPATVHVTPISVPAPVQEPLVIDHHSD 1327


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 34.3 bits (75), Expect = 0.30
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 486  SAPPPTTEPGPARTSEPPALLNEPSVVIDETEKLNILGFEVVEERSPSKSPQLDRLSDLK 545
            S   P  EP PA TS PP + + P VV + T     L  EV  +++PS + Q        
Sbjct: 1235 SISTPHPEPTPAITSCPPPVPSVPPVVSNGT-----LNLEVAPKQTPSATNQNVDTQHSS 1289

Query: 546  QSSSTELL---TPSPMVLTPFDCRS-LDEVLTPDEFPD 579
             ++ST  L   TP+ + +TP    + + E L  D   D
Sbjct: 1290 STASTATLVSETPATVHVTPISVPAPVQEPLVIDHHSD 1327


>L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical
           protein ZK1236.7 protein.
          Length = 324

 Score = 33.1 bits (72), Expect = 0.68
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 95  EEKRLRQSETLKKTNLLKFNVFKKNITDDHEISTERRQPEFKIPTAVFEGMKADFRVRFP 154
           EE++ R+ E  KK +  +         ++  +  ER + E K     +  MKA F +   
Sbjct: 157 EERKRREEEREKKRDEERAKEEADEKAEEERLRKEREEKERK-EHEEYLAMKASFAIEEE 215

Query: 155 SFPPQIDRDARGFVHTFILDVIKWAAIMNVDELS 188
                   +A   +  F+ D +K   ++N+DELS
Sbjct: 216 GTDAIEGEEAENLIRDFV-DYVKTNKVVNIDELS 248


>AL132898-12|CAB60945.3|  576|Caenorhabditis elegans Hypothetical
           protein Y59A8B.22 protein.
          Length = 576

 Score = 32.7 bits (71), Expect = 0.90
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 49  KCHREQMQRQRKAEKASSFTSTLPRSDQRKSERGLKLSSHASFSKFEEKRLRQSETLKKT 108
           +C        +  E+A +    +P+++  +SE         +  KFEE        LK+ 
Sbjct: 485 RCLANYEAANKNLERARAKNREIPKAEAEQSE---------ACKKFEEITGLSKNELKEL 535

Query: 109 NLLKFNVFKKNITDDHEISTERRQPEFKIPTAVFEGMKA 147
              +   FKKN+TD  E+  +  + E  +   V E +K+
Sbjct: 536 KTRRVQAFKKNLTDLAELEIKHSKAEISLLRDVVERLKS 574


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 16/167 (9%)

Query: 483 GVGSAPPPTTEPGPAR------TSEPPALLNEPSVVID-ETEKLNILG--FEVVEERSPS 533
           G G    PT  PGP        TS  P L N+     D ET    +        E  +PS
Sbjct: 273 GNGKTVNPTIRPGPQELSGGIGTSSKPRLPNDADYTRDVETGSSEVTTPFGRNTESSTPS 332

Query: 534 KSPQLDRLSDLKQSSST--ELLTPSPMVLTPF-DCRSLDEVL--TPDEFPDNIPGLSDVN 588
           KSP     SD   SS+   +  TP  M   PF D +++  +   +  +  D+ P L D++
Sbjct: 333 KSPGSTSSSDTTPSSNENGKETTPFEMTKNPFNDLKTIRPIYLGSSSDEEDDEP-LEDIS 391

Query: 589 YDIDLSDFSADTSLAEDPPAPDRRRTFDPFAPQTSKDSYKLLESFDE 635
              D S  S++ S     P    +    P + ++     +  ES D+
Sbjct: 392 KATD-SPHSSEKSQIPGSPGSQIKNPLKPSSTESETIGPESSESEDD 437


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 499 TSEPPALLNEPSVVIDETEKLNILGFEVVEERSPSKSPQLDRLSDLKQSSSTELLTPSPM 558
           TS   +  N P+   D T    I G  V+  +S S +           S +TELLT SP 
Sbjct: 122 TSTDASTTNAPTTGKDSTTPEIITGIVVINSKSESVTDMSTTRFSTTLSPTTELLT-SPE 180

Query: 559 VLTPFDCRSLDEVLTPDEFPDNIPGLSDVNYDIDLSDFSADTSLA 603
            L   D  +  E  +PD   + I    + N   + +  S + S++
Sbjct: 181 TLVSTDSSTSTEQTSPDNTTE-IASPMETNTTTEATTTSVEPSVS 224


>U40798-2|AAQ01525.2|  389|Caenorhabditis elegans Hypothetical
           protein R13A1.9 protein.
          Length = 389

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 18/82 (21%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 181 IMNVDELSE-RVQKQYQRFMKHMETSQHYASVDSDARELLIDFVEKHAMTYLHELPSIVF 239
           I+N+D+ S+ +    Y   +     ++H   +   A +++I   +K  M ++    S+  
Sbjct: 255 ILNIDQFSDPKFGPMYPSVL-----AEHPHILQGSAADVVIPDSDKSKMVHVDSKTSVAS 309

Query: 240 SPSGTDDERQDRAMSERIQQLS 261
             SG++D+R++ ++  R ++LS
Sbjct: 310 GASGSNDQRRESSIRRRFRRLS 331


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 488  PPPTTEPGPARTSEPPALLNEPSVVIDETEKLNILGFEVVEERSPSKSPQLDRLSDLKQS 547
            PP T  P   +TS PP    E  +   E +K N +  E  ++ +PSK+    +     QS
Sbjct: 1321 PPVTKTPVTPKTSIPPPTEPEKPIKPSEQKKPNAIPVERPKQPTPSKARTPSKTP--SQS 1378

Query: 548  SSTELLTPSPMVLTPFDCRSLDEVLTP 574
            +  +    SP  + P    + D V  P
Sbjct: 1379 NRAQHPASSPAPIAPTSAPTDDFVHVP 1405


>AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical
           protein K09F6.9 protein.
          Length = 609

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 44  QGYCSKCHREQMQRQRKAEKASSFTSTLPRSDQRKSERGLKLSSHASFSKFEEKRLRQSE 103
           Q Y  +  ++ ++ Q+KAE+         R D +K+ER   ++ H      E+++  Q E
Sbjct: 200 QKYHDEARKKYIETQKKAEENEE-----KRRDAQKAERDAHIARHKQAEALEKEKREQEE 254

Query: 104 TLKK 107
            +KK
Sbjct: 255 KMKK 258


>Z70035-3|CAA93863.1|  435|Caenorhabditis elegans Hypothetical
           protein R09D1.3 protein.
          Length = 435

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 212 DSDARELLIDFVEKHAMTYLHELPSIVFSPSGTDDERQDRAMSERIQQLSWVGEKHLECK 271
           D DA +  +DF+  H+M Y   LP+   +P+G            +   + W   KH  C+
Sbjct: 235 DLDAIQKHVDFINVHSMDYAKPLPNQWGTPTGPSASMNFNIGLRQHYNVDWT-MKHYTCE 293

Query: 272 LDR 274
           L +
Sbjct: 294 LKK 296


>Z83114-9|CAB05553.2|  941|Caenorhabditis elegans Hypothetical
           protein K09B11.9a protein.
          Length = 941

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 5/104 (4%)

Query: 184 VDELSERVQKQYQRFMKHMETSQHYASVDSDARELLIDFVEKHAMTYLHELPSIVFSP-- 241
           V+EL +++   YQ F +  +T  HY S +++ ++ L    E       +++  +   P  
Sbjct: 826 VNELEQQLGFGYQAFEQQSQTMLHYTSENANLKDRLAK-TEAALAEANYKIEQLNLKPIS 884

Query: 242 SGTDDERQDRAMSERIQQLSWVGEKHLECKLDRNN--AECRRLL 283
           +G   E + +A SE   +L    E+ L    D++N  +  RRLL
Sbjct: 885 NGIVVEHEPQADSEEFSKLKQEQEELLMLLADQHNKMSAYRRLL 928


>Z83114-8|CAJ76944.1|  875|Caenorhabditis elegans Hypothetical
           protein K09B11.9b protein.
          Length = 875

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 5/104 (4%)

Query: 184 VDELSERVQKQYQRFMKHMETSQHYASVDSDARELLIDFVEKHAMTYLHELPSIVFSP-- 241
           V+EL +++   YQ F +  +T  HY S +++ ++ L    E       +++  +   P  
Sbjct: 760 VNELEQQLGFGYQAFEQQSQTMLHYTSENANLKDRLAK-TEAALAEANYKIEQLNLKPIS 818

Query: 242 SGTDDERQDRAMSERIQQLSWVGEKHLECKLDRNN--AECRRLL 283
           +G   E + +A SE   +L    E+ L    D++N  +  RRLL
Sbjct: 819 NGIVVEHEPQADSEEFSKLKQEQEELLMLLADQHNKMSAYRRLL 862


>AL021483-8|CAI79173.1|  941|Caenorhabditis elegans Hypothetical
           protein K09B11.9a protein.
          Length = 941

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 5/104 (4%)

Query: 184 VDELSERVQKQYQRFMKHMETSQHYASVDSDARELLIDFVEKHAMTYLHELPSIVFSP-- 241
           V+EL +++   YQ F +  +T  HY S +++ ++ L    E       +++  +   P  
Sbjct: 826 VNELEQQLGFGYQAFEQQSQTMLHYTSENANLKDRLAK-TEAALAEANYKIEQLNLKPIS 884

Query: 242 SGTDDERQDRAMSERIQQLSWVGEKHLECKLDRNN--AECRRLL 283
           +G   E + +A SE   +L    E+ L    D++N  +  RRLL
Sbjct: 885 NGIVVEHEPQADSEEFSKLKQEQEELLMLLADQHNKMSAYRRLL 928


>Z78016-4|CAC42335.1|  359|Caenorhabditis elegans Hypothetical
           protein R186.7 protein.
          Length = 359

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 57  RQRKAEKASSFTSTLPRSDQRKSERGLKLSSHASFSKFEEKRL---RQSETLKKTNLLKF 113
           R+ K EK     +   +   R+    L + + +SF K E+K     +Q E  KK    K 
Sbjct: 141 REEKIEKLKETENKDSKQRNRRLFSNLIMGTLSSFKKTEKKTTQQEKQEEVEKKLEETKK 200

Query: 114 NVFKKNITDDHEISTERRQPE 134
             F+    + H++  +RR+ E
Sbjct: 201 KDFESRKEEKHDLLNKRREQE 221


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 48  SKCHREQMQRQRKAEKASSFTSTLPRSDQRKSERGLKLSSHASFSKFEEKRLRQSETLKK 107
           S   R++  R+ K+ K+         S++RK ER  +++      K + +R   S  +KK
Sbjct: 68  SSSRRKKKLRKEKSRKSQRSKRKKRESERRKKERSKRIARSKKSIKRDRERDSDSSRIKK 127

Query: 108 TNLLKFNVFKKNITDD-HEISTER 130
           +   K N+ K N  D   +IS ++
Sbjct: 128 SG-SKRNLEKSNRDDSKRKISKDK 150


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 487 APPPTT--EPGPARTSEPPALLNEPSVVIDETEKLNILGFEVVEE-RSPSKSPQLDRLSD 543
           APPP     PG + +  PP L  +P  VI+  EK  + G E   + R  S+  ++  L+ 
Sbjct: 28  APPPAPPLAPGASTSQAPPPL--QPPPVIESAEKFYVPGVEEKSKFRILSQQVEISNLNI 85

Query: 544 LKQSSS--TEL-LTPSPMVLTPFDCRSLDEVLTPDEFPDNIP--GLSDVNYDIDLSDFSA 598
             +S +  TE+ L P    L   D       L P+E P +     L+ V  +    DF  
Sbjct: 86  STRSFNVRTEIVLLPCEKSLYQLDLHIGKCSLLPNEVPGSASKVTLNGVECEYSRRDFWK 145

Query: 599 D 599
           D
Sbjct: 146 D 146


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 490  PTTEPGPARTSEPPALLNEPSVVIDETEKLNILGFEVVEERSPS-KSPQLDRLSDLKQSS 548
            PTT   P  T EP     EP+    E E  +I  +E   +  P    P     +    +S
Sbjct: 3008 PTTTEEPTTTEEPTTTTEEPTTTTTE-EPYHI--YETSRDDDPEIIIPVETTTTSTTTTS 3064

Query: 549  STELLTPSPMVLTPFDCRSLDEVLTPDEFPDNIPGLS-DVNYDIDLSDFSADT 600
            +TE     P ++ P D    ++V   +E    I  +S D   D D SD+S  T
Sbjct: 3065 TTEEPEAEPALVLPTDPVEENDVSDEEEEISTISTVSPDNGLDSD-SDYSEGT 3116


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 490  PTTEPGPARTSEPPALLNEPSVVIDETEKLNILGFEVVEERSPS-KSPQLDRLSDLKQSS 548
            PTT   P  T EP     EP+    E E  +I  +E   +  P    P     +    +S
Sbjct: 3008 PTTTEEPTTTEEPTTTTEEPTTTTTE-EPYHI--YETSRDDDPEIIIPVETTTTSTTTTS 3064

Query: 549  STELLTPSPMVLTPFDCRSLDEVLTPDEFPDNIPGLS-DVNYDIDLSDFSADT 600
            +TE     P ++ P D    ++V   +E    I  +S D   D D SD+S  T
Sbjct: 3065 TTEEPEAEPALVLPTDPVEENDVSDEEEEISTISTVSPDNGLDSD-SDYSEGT 3116


>AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlecan
           protein.
          Length = 925

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 490 PTTEPGPARTSEPPALLNEPSVVIDETEKLNILGFEVVEERSPS-KSPQLDRLSDLKQSS 548
           PTT   P  T EP     EP+    E E  +I  +E   +  P    P     +    +S
Sbjct: 558 PTTTEEPTTTEEPTTTTEEPTTTTTE-EPYHI--YETSRDDDPEIIIPVETTTTSTTTTS 614

Query: 549 STELLTPSPMVLTPFDCRSLDEVLTPDEFPDNIPGLS-DVNYDIDLSDFSADT 600
           +TE     P ++ P D    ++V   +E    I  +S D   D D SD+S  T
Sbjct: 615 TTEEPEAEPALVLPTDPVEENDVSDEEEEISTISTVSPDNGLDSD-SDYSEGT 666


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,478,841
Number of Sequences: 27539
Number of extensions: 771349
Number of successful extensions: 2881
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2864
Number of HSP's gapped (non-prelim): 31
length of query: 696
length of database: 12,573,161
effective HSP length: 86
effective length of query: 610
effective length of database: 10,204,807
effective search space: 6224932270
effective search space used: 6224932270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)