GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002823-TA|BGIBMGA002823-PA|IPR003123|Vacuolar sorting
protein 9, IPR002653|Zinc finger, A20-type, IPR013995|Vacuolar sorting
protein 9, subgroup
         (696 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    29   0.17 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    28   0.22 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   2.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   2.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   3.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 0.17
 Identities = 20/74 (27%), Positives = 33/74 (44%)

Query: 594 SDFSADTSLAEDPPAPDRRRTFDPFAPQTSKDSYKLLESFDEFSIVDNARESDPYEVVHR 653
           SD S   S  + P  P+   + +  +  + K+++K  E  DE +  DN     PY +  R
Sbjct: 283 SDSSVVGSPRDSPIEPEIEISQNSVSTGSDKENHKTEEPNDEVATYDNTPRDFPYYMYSR 342

Query: 654 PDPFGSVLDNDEGR 667
                S L ++E R
Sbjct: 343 EQYSQSHLISNENR 356


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 503 PALLNEPSVVIDETEKLNILGFEVVEERSPSKSPQLDRLSDLKQSSSTELLTP 555
           P+ LN PSV IDE +K +I     V   S  K     R + L Q  +   +TP
Sbjct: 387 PSTLNIPSVKIDEDQKCSIESITSVNSTSSPK--PFPRRATLAQLHNFTTMTP 437


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 497 ARTSEPPALLNEPSVVIDETEKLNILGFEVVEERSPSKSPQL 538
           A+  +   +++   + IDE E+L +L   +V    P  SP+L
Sbjct: 118 AKYEDCSGIVSAHKIAIDEYERLWVLDSGLVNNTQPMCSPKL 159


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 77  RKSERGLKLSSHASFSKFEEKRLRQSETLKKTNLLK 112
           +KS R L L   A   + E K L  S+   K NL+K
Sbjct: 492 QKSPRTLTLGIFAEKLRLETKELFSSQQKTKNNLMK 527


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 547 SSSTELLTPSPMVLTPFDCRSLDEVLTPDEFPDNIPGLS 585
           S +T +L   P  ++ FD     +   P EFP NI G S
Sbjct: 629 SPTTYILLKYP--ISGFDLEPRQKEFLPKEFPANIEGTS 665


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,217
Number of Sequences: 429
Number of extensions: 9399
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 5
length of query: 696
length of database: 140,377
effective HSP length: 62
effective length of query: 634
effective length of database: 113,779
effective search space: 72135886
effective search space used: 72135886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)