GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002822-TA|BGIBMGA002822-PA|undefined
         (175 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    32   0.055
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    28   0.67 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    26   2.7  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    26   2.7  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    26   3.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   3.6  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   4.8  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   4.8  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   6.3  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   6.3  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   6.3  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   8.3  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 31.9 bits (69), Expect = 0.055
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 97  KDLAAFMEDIHSNSIVRAGSSQYSISSRKYRQNDASISDCRQHGKWL 143
           +D    ++ +H N I R G+  Y   +RKY Q+  S+   RQH K++
Sbjct: 128 EDEKILIDHVHKNDINRFGTKVYEELARKYPQH--SLESWRQHYKYM 172


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 128 QNDASISDCRQHGKWLAHKDSLGQQICPESHSQLQRYFKSYFFN 171
           Q   S+S C +H   + + +++ +Q+  ESH   Q   K ++FN
Sbjct: 98  QTLGSVSFCEKHAIDINYSENVNKQLNFESHLDDQTCSKRFYFN 141


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 26/135 (19%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 30  EREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNWKAHISYNIEWYKKNLSYKTRLHCLHH 89
           + E+  KK L +  + + ++  +   +AFL+      +S N ++Y KN+   T    LH+
Sbjct: 381 QEEERKKKKLAKYTEVIISNLKASNIEAFLEYLRSNDLSINFQFYPKNVHLHTSTP-LHY 439

Query: 90  GSKTSEGKDLAAFMEDIHSNSIVRA-GSSQYSISSRKYRQNDASISDCRQHGKWLAHKDS 148
                  K +A  + +    +++   G + + IS+      D  +    + G+     ++
Sbjct: 440 AVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEISTGNKEVKDEFLIARHELGESFFDWEA 499

Query: 149 LGQQICPESHSQLQR 163
             +   P+S  Q+Q+
Sbjct: 500 -AKVGAPQSREQIQK 513


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 92  KTSEGKDLAA--FMEDIHSNSIVRAGSSQYSISSRKYRQNDASISDCRQHGKWLAHKDSL 149
           K+S+   LAA   ME+    +++ A SS+   S  ++R+N     + R +GK   H+ S 
Sbjct: 14  KSSQTSHLAARVAMENPQKGNVINAQSSRQPSSENEFREN-LFFKEMRTNGK-NEHETSC 71

Query: 150 GQQICPESHSQLQRY 164
              +   +    +RY
Sbjct: 72  RSVVLYRNSKSAKRY 86


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 17/51 (33%), Positives = 21/51 (41%)

Query: 57  AFLDKNWKAHISYNIEWYKKNLSYKTRLHCLHHGSKTSEGKDLAAFMEDIH 107
           A  DK   A +   IE  +  L   T  H     S   +GKD   + EDIH
Sbjct: 260 AMKDKIISATVDNTIEHVETTLDPDTEWHEPTRISYEWDGKDAETYTEDIH 310


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 121 ISSRKYRQNDASISDCRQHGKWLAHKDSLGQQICPESHSQLQRYFKSYFFNVI 173
           IS +  RQ   S SD   HG        L + I  +S  +LQRY   YF ++I
Sbjct: 194 ISGKGVRQTIGS-SDSTNHGPAF----QLARNIFHDSADRLQRYVCQYFSDII 241


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 19  FWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMS 52
           F +H NTR+    + Y  KN+P+  + L  ++ S
Sbjct: 261 FDSHVNTRYSMSWDCYSSKNIPKNTEALPNNDSS 294


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 87   LHHGSKTSEG--KDLAAFMED---IHSNSIVRAGSSQYSISSRKYRQNDASISDCRQHGK 141
            +  G +  +G  KD+  FM       + S+ +  S+ Y+  S+ YR    S S  R+   
Sbjct: 1241 IEEGDEEVDGQRKDILNFMNSQSLTQTGSVPKRKSTSYTRPSKSYRHKRGSTSYSRKRKY 1300

Query: 142  WLAHKDS 148
              + KDS
Sbjct: 1301 STSQKDS 1307


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 86  CLHHGSKTSEGKDLAAFMEDIHSNSIVRAGSS 117
           C  H ++ S+   +AAF +D  +NSI + G +
Sbjct: 186 CRPHRNRNSKKAPVAAFPKDSIANSIPKVGET 217


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 108 SNSIVRAGSSQYS-ISSRKYRQNDASISDCRQHGKW 142
           SNS   +GSS  S  SSR  RQN  + S+ R + ++
Sbjct: 272 SNSPALSGSSTPSNTSSRSNRQNHGNFSEKRHYDRY 307


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 53  VFYKAFLDKNWKAHISYNIEWYKKNLSYKTRLHCLHHGS 91
           ++Y A++ K  +   ++ +   KK L +   LHC HHG+
Sbjct: 116 LYYCAYISKFLELTDTFFLVLRKKPLQF---LHCYHHGA 151


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 600

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 54 FYKAFLDKNWKAHISYNIEW 73
          +YK  L+KNW   I+ NI W
Sbjct: 16 YYKCLLNKNWNEPIN-NIFW 34


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 876,309
Number of Sequences: 5004
Number of extensions: 36832
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 13
length of query: 175
length of database: 2,362,478
effective HSP length: 68
effective length of query: 107
effective length of database: 2,022,206
effective search space: 216376042
effective search space used: 216376042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)