Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002822-TA|BGIBMGA002822-PA|undefined
(175 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 30 1.2
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 29 1.6
12_01_0157 - 1191231-1191316,1192238-1192382 28 4.8
11_06_0075 - 19829016-19829399 28 4.8
09_01_0005 - 193214-193228,193659-193776,193876-194072,194534-19... 28 4.8
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 28 4.8
10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379... 27 6.3
09_02_0061 + 3738335-3738380,3738818-3738945,3741032-3741081,374... 27 6.3
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 27 6.3
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 29.9 bits (64), Expect = 1.2
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 64 KAHISYNIEWYKKNLSYKTRLHCLHHGSKTSEGKDLAAFMEDIHSNSIVRAGSSQYSISS 123
+ H+ NI YK +K ++ HG+K D+ A +E+IH G S+ IS
Sbjct: 140 REHVDKNISSYKY---WKYSVN--EHGTK-----DMPAIVEEIHKIKTSELGKSRPHISE 189
Query: 124 RKYRQNDASISDCRQHGKWLAHKDSLGQQICPESHS 159
QND I + +D+ ++C HS
Sbjct: 190 ETEDQND-KIKNLEVQASQDDERDNQPYKLCAVCHS 224
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 60 DKNWKAHISYNIEWYKKNLSYKTRLHCL 87
DK+W AH ++W + N + R HC+
Sbjct: 66 DKSWYAHEPLYLQWKEWNCKSECRYHCM 93
>12_01_0157 - 1191231-1191316,1192238-1192382
Length = 76
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 138 QHGKWLAHKDSLGQQICPESHSQLQRYFKSY 168
Q W KD +GQ+IC LQ Y +++
Sbjct: 27 QQRSWREKKDKMGQEICSAIPPDLQDYDRNF 57
>11_06_0075 - 19829016-19829399
Length = 127
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 142 WLAHKDSLGQQICPESHSQLQRYFKSY 168
W A+K+ LG+ CP H LQ ++
Sbjct: 28 WAAYKERLGETNCPTVHFNLQELLTAH 54
>09_01_0005 -
193214-193228,193659-193776,193876-194072,194534-195493
Length = 429
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 6 REMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNW 63
+++R +V+ F +++ T F + E K P G Q + + + F KA++++ W
Sbjct: 319 KQVRRKVKGFFKRY-PDAQTAFSADPEKMAKYLAPLGLQRVKVNRIQRFSKAYVEEEW 375
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/101 (19%), Positives = 46/101 (45%)
Query: 34 YLKKNLPEGQQNLSADEMSVFYKAFLDKNWKAHISYNIEWYKKNLSYKTRLHCLHHGSKT 93
Y+K+ +GQ E S K+ DK+ K + N E + K + K S +
Sbjct: 48 YIKETGTKGQSKELQKEESKSRKSTKDKSKKNKVPANAEEFHKKYTTKVIRKESRTDSSS 107
Query: 94 SEGKDLAAFMEDIHSNSIVRAGSSQYSISSRKYRQNDASIS 134
+E + ++++ +N V++ + +I+ R +++ ++
Sbjct: 108 TEQVIGTSSIQEMETNEQVKSKDTSKAIAERIHKEYTTKVN 148
>10_08_0568 +
18837195-18837203,18837694-18837741,18837853-18837912,
18837986-18838155,18838297-18838369,18838529-18838594,
18838685-18838768,18838950-18839027,18839122-18839205,
18839562-18839641,18839791-18839848,18839933-18840235,
18840361-18840531,18840972-18841204,18841303-18841705,
18841961-18842212,18842293-18842790,18843073-18843170,
18843314-18843413,18843653-18843798,18843912-18844068
Length = 1056
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 32 EDYLKKNLPEGQQNLSADEMSVFYK-AFLDKNW 63
ED++ + P GQ+ L A +M+ Y A ++K+W
Sbjct: 65 EDFVDPDTPAGQKKLLASQMAKQYNPAAVEKSW 97
>09_02_0061 +
3738335-3738380,3738818-3738945,3741032-3741081,
3741183-3741254,3741669-3741819,3741862-3741906
Length = 163
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 108 SNSIVRAGSSQYSISSRKYRQNDASISDCRQHGKWLAHKDSLGQQICPESH 158
S I+R S QY+ S + ++ S++ G HKD LG +CP H
Sbjct: 27 SLEIMRKFSEQYARRSNTFFCSEKSVTAVVIKGL-ADHKDQLGAPLCPCRH 76
>03_02_0919 -
12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 32 EDYLKKNLPEGQQNLSADEMSVFY-KAFLDKNWKA 65
ED++ ++ P GQ+ L A +M+ Y + ++K+W A
Sbjct: 78 EDFIDQDTPNGQKKLLAPQMANQYCPSTVEKSWYA 112
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.130 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,057,263
Number of Sequences: 37544
Number of extensions: 196227
Number of successful extensions: 413
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 10
length of query: 175
length of database: 14,793,348
effective HSP length: 77
effective length of query: 98
effective length of database: 11,902,460
effective search space: 1166441080
effective search space used: 1166441080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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