GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002822-TA|BGIBMGA002822-PA|undefined
         (175 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49337| Best HMM Match : SGS (HMM E-Value=3.3)                       53   2e-07
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    32   0.23 
SB_4668| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.30 
SB_46300| Best HMM Match : UAF_Rrn10 (HMM E-Value=4)                   30   0.92 
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               29   2.1  
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 29   2.1  
SB_4877| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_25842| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   4.9  
SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)            27   6.5  
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)                   27   8.6  
SB_9541| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_58629| Best HMM Match : Homeobox (HMM E-Value=0.05)                 27   8.6  

>SB_49337| Best HMM Match : SGS (HMM E-Value=3.3)
          Length = 230

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 2/41 (4%)

Query: 37  KNLPEGQQNLSADEMSVFYKAFLDKNWKAHISYNIEWYKKN 77
           ++L  G+Q  +ADE+SVFYK FLDKN++ H  Y  EWYKKN
Sbjct: 78  ESLKGGKQ--AADELSVFYKDFLDKNYQLHKEYQWEWYKKN 116


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 7   EMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNWKA- 65
           E   E  E+N ++ T +NT +  E  +Y+ + + E   N    E +  Y    +  +   
Sbjct: 448 EYNNEYTEYNTEYNTEYNTEYNTEYTEYITEYITE--YNTDYTEYNTEYNTEYNTEYNTE 505

Query: 66  HISYNIEWYKKNLSYKTRLHCLHHGSKTSE 95
           +  YN ++ + N  Y T  +  ++    +E
Sbjct: 506 YTEYNTDYTEYNTEYNTEYNTEYNTEYNTE 535



 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 7   EMRTEVQ-EFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAF-LDKNWK 64
           E  TE   E+N ++ T +NT +  E  +Y+ + + E   + + D  + +   +  + N +
Sbjct: 377 EYNTEYNTEYNTEYNTEYNTEYNTEYTEYITEYITEYNTDYNTDYNTEYNTEYNTEYNTE 436

Query: 65  AHISYNIEW 73
            +  YN E+
Sbjct: 437 YNTEYNTEY 445



 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 5   YREMRTEVQ-EFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNW 63
           Y E   +   E+N ++ T +NT +  E  +Y  +   E   + +  E +  Y    + N 
Sbjct: 261 YNEYNNDYNTEYNNEYNTEYNTEYNTEYTEYNTEYNTEYNTDYNT-EYNTEYNT--EYNT 317

Query: 64  KAHISYNIEWYKKNLSYKT 82
           + +  YN E+ + N  Y T
Sbjct: 318 EYNTEYNTEYTEYNTEYNT 336


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 7    EMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNWKAH 66
            + R ++ ++  +    +N R  + R  ++ + L  G + L  D++ + Y +   K  +  
Sbjct: 2239 KFRNQIGQYTGELKGEYNLRNGR-RTFFVVRMLRNGTKQLFYDKLEMSYSSLESKRRELE 2297

Query: 67   ISYNIEWYKKNLSYKTRLHCLHHGSKTSEGKDL 99
             SY +    +  SY      L+H SKT    +L
Sbjct: 2298 TSYTLRVLGRTFSYGVEFAHLNHSSKTRTHHEL 2330


>SB_4668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 45  NLSADEMSVFYKAFLD-KNWKAHISYNIEWYKKNLSYKT 82
           N +  E  + Y A  D  NWK ++SY I+WYK+N   KT
Sbjct: 72  NKAVMECHLQYMARFDFPNWK-NVSYEIKWYKQNKLAKT 109


>SB_46300| Best HMM Match : UAF_Rrn10 (HMM E-Value=4)
          Length = 303

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 116 SSQYSISSRKYRQNDASISDCRQHGKWLAHKDSLGQQICPESHSQL 161
           SS  SI  R+Y     S S  RQHG WL   D  G+    E  S+L
Sbjct: 177 SSGVSIGGRRYEFLACSNSQLRQHGAWLYAHD--GEHDAAEIRSKL 220


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 13/107 (12%)

Query: 1   MEKTYREMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLD 60
           + K   + R+E+++  QK   H   +  + R ++ K+   EG+Q    +EM    +A L+
Sbjct: 231 LSKQLEKARSELEK--QKL--HEGQKLEEARHEFEKQIQEEGRQ---LEEM----RAELE 279

Query: 61  KNWKAHI--SYNIEWYKKNLSYKTRLHCLHHGSKTSEGKDLAAFMED 105
           +  K H   + N+E  ++ +S  TR H +    +TS  K+L   +E+
Sbjct: 280 RQRKLHAMEAQNVEEARQRVSELTRKHEIADLERTSREKELKREIEN 326


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 19  FWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNWKAHI 67
           FW H   + +    +++KKN P G     AD   +F   F D N+ A +
Sbjct: 63  FWNHWKQQHYPSCIEFMKKNYPSGFS--YADFGPMFKAEFFDPNYFAKL 109


>SB_4877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 82  TRLHCLHHGSKTSEGKDLAAFMEDIHSNSIVRAGSSQYSISSRKYRQNDASISDCRQHGK 141
           TRL  L++G+ +S+ +DL A    I  NSI+   S  +S ++R        I  CR  G 
Sbjct: 65  TRLLLLNYGTDSSQFQDLPAKDTSI-GNSIMMRTSRLFSPNARGEIPGAFRIGGCRS-GH 122

Query: 142 WL 143
           W+
Sbjct: 123 WM 124


>SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 7   EMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNWKAH 66
           E  T+  E+N ++ T +NT   +   +Y  +   E     + +  + +   + + N   +
Sbjct: 56  EYNTDYTEYNTEYNTEYNTEHTEYNTEYNTEYNTEYNTEYNTEYNTEYNNEYTEYNTDYN 115

Query: 67  ISYNIEWYKK-NLSYKT 82
             YN E+  + N  Y T
Sbjct: 116 TEYNTEYNTEYNTEYNT 132



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 5   YREMRTEVQ-EFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNW 63
           Y E  T+   E+N ++ T +NT +  E  +Y+ + + E   + +  E +  Y    + N 
Sbjct: 107 YTEYNTDYNTEYNTEYNTEYNTEYNTEYTEYITEYITEYNTDYNT-EYNTEYNT--EYNT 163

Query: 64  KAHISYNIEWYKKNLSYKT 82
           + +  YN E+ +    Y T
Sbjct: 164 EYNTEYNTEYTEYITEYIT 182


>SB_25842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 100 AAFMEDIHSNSIVRAGSSQYSISSRKYRQNDASISDCRQHGKWLAH 145
           A  + DIH   +  +  S++ +S    +    + SD  Q+ KW  H
Sbjct: 31  AKIVSDIHETELCPSNDSKFVLSDSSEQSERRTESDSNQNTKWEEH 76


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 55  YKAFLDKNWKAHISYNIEWYKKNLSYKTRLHCLHHGSKTSEGKDLAA 101
           Y  F  K+W AHIS  +E Y +    K +   L   S+    + L A
Sbjct: 797 YVRFYPKSWFAHISMRVELYGQRTVPKPKARALGVQSRRIPNRALTA 843


>SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)
          Length = 356

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 9   RTEVQEFNQKFWTHHNTRFFQEREDYLKKNL-PEGQQNLSADEMSVFYKAFLDKNWKAHI 67
           R   Q  + K++     R  +E E  +KK   P     L  D+ S   K + + N +A  
Sbjct: 173 RPRDQPRDDKYYDDMIVRINEELEQAVKKGQSPYDIYGLEEDDASGEIK-WRENNLRARD 231

Query: 68  SYNIEWYKKNLSYKTRLHCLHHGSKTSEGKDLAAFMEDIHSNSIVRAGSSQYSISSRKYR 127
           +         L+ KT+          S+  D+    E+  S     + SS+YS+S RKY 
Sbjct: 232 NSYFRKQTPKLARKTKF--TRKQRLESDEDDVFECPENAESFVQNNSPSSKYSVSGRKYI 289

Query: 128 QNDASISDCRQH 139
            N +     R+H
Sbjct: 290 ANASRGRSPRRH 301


>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
          Length = 857

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 30  EREDYLKKNLPEGQQNLSADEMSVFY-KAFLDKNWKAHISYNIEWYKK 76
           ER +YL K L  G   +    +   Y   F   +++A +S+NI +YK+
Sbjct: 666 ERREYLFKVLVIGDLGVGKTSLIKRYVHQFFSVHYRATVSFNIVYYKE 713


>SB_9541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 29  QEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNWKAHISYNIEWYKKNLSY 80
           +E ED L K   E    L  DE    YKA         I Y IE+ K+ L++
Sbjct: 376 EEEEDLLSKLTVEA---LPKDEKEKLYKAIDYSEGARPIKYPIEYIKRRLTF 424


>SB_58629| Best HMM Match : Homeobox (HMM E-Value=0.05)
          Length = 466

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 2   EKTYREMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDK 61
           E+  R+ + E+ +      T  ++RF ++++D+L +    GQ+ L+  ++  F+     K
Sbjct: 301 EEAPRQRQQELSQGWALKTTRKSSRFSEKQKDFLNEMFDRGQEFLTEKQIQSFFSRRAAK 360

Query: 62  NWK 64
           + K
Sbjct: 361 SRK 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,106,156
Number of Sequences: 59808
Number of extensions: 242265
Number of successful extensions: 634
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 33
length of query: 175
length of database: 16,821,457
effective HSP length: 77
effective length of query: 98
effective length of database: 12,216,241
effective search space: 1197191618
effective search space used: 1197191618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)