GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002822-TA|BGIBMGA002822-PA|undefined
         (175 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           25   1.7  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    24   2.3  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   6.9  

>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 62  NWKAHISYNIEWYKKNLSYKTRLHCLHHGSKTSEGKDLAAFMEDI 106
           +W  H+       +K     TRL   H G KTS+ + LA+  E +
Sbjct: 809 SWLPHVREVTTRARKIADAVTRLLRNHSGPKTSKARLLASVAESV 853


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 63  WKAHISYNIEWYKKNLSYKTRLHCLHHGSKTSEGKDLAAFMEDI 106
           W+ H++   E   + ++  TRL   H G +T++ + LA   E +
Sbjct: 803 WRDHVTKVSEKASRVVAAVTRLMQNHSGPRTAKSRLLAYVAESV 846


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 62  NWKAHISYNIEWYKKNLSYKTRLHCLHHGSKTSEGKDLAA 101
           +W  H+   I+   + +   T+L   H G KTS  + LAA
Sbjct: 757 SWVPHVKAVIQKATQIVQAVTQLMPNHRGPKTSRCRLLAA 796


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,680
Number of Sequences: 2123
Number of extensions: 7099
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 516,269
effective HSP length: 60
effective length of query: 115
effective length of database: 388,889
effective search space: 44722235
effective search space used: 44722235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)