Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002820-TA|BGIBMGA002820-PA|IPR001401|Dynamin,
IPR006884|Fzo-like conserved region
         (766 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    30   0.081
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    28   0.25 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   2.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   4.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   7.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   7.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 0.081
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 97  EVLKRDHMKVAFFGRTSNGKSTVINAMLHDKILPSGIGHTTNC 139
           +++KR H  V   G   +GK+T+++A+ +  I  S  G  T C
Sbjct: 140 QLIKR-HPIVTIMGHVDHGKTTLLDALRNTSIAKSEFGGITQC 181


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 0.25
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 4/46 (8%)

Query: 80  QDMGNVESYVSKVEAI-REVLKRDH-MKVAFFGRTSNGKSTVINAM 123
           QD+  ++  VSK+ A+ REV+ R   + +   G  ++GKST++ A+
Sbjct: 19  QDLSKLD--VSKLTALSREVISRQATINIGTIGHVAHGKSTIVKAI 62


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 191 RELCALLRDDVV--LVDSPGVDVTPNLDTWIDKYCLDADVFVL 231
           R+LC + R +++  +    G+D   +   W DK  ++A+V VL
Sbjct: 307 RDLCDVQRYNLLETIATHMGLDTRTSTSLWKDKAMIEANVAVL 349


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 22  MLNNGSVRVNMQNVDSPLQIFVRAKKKINDIFVE 55
           +++ G VRV ++  D+P + ++R   K  D F E
Sbjct: 259 IISRGQVRVTIKQPDTPEEKYIRTLSK-GDFFGE 291


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 106 VAFFGRTSNGKSTVINAMLHDKILP 130
           +   G+ S  K+ V+N ++ + ILP
Sbjct: 29  IIILGQDSKAKAIVVNTLISNDILP 53


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 106 VAFFGRTSNGKSTVINAMLHDKILP 130
           +   G+ S  K+ V+N ++ + ILP
Sbjct: 67  IIILGQDSKAKAIVVNTLISNDILP 91


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,707
Number of Sequences: 429
Number of extensions: 7492
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 7
length of query: 766
length of database: 140,377
effective HSP length: 63
effective length of query: 703
effective length of database: 113,350
effective search space: 79685050
effective search space used: 79685050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)