GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002820-TA|BGIBMGA002820-PA|IPR001401|Dynamin,
IPR006884|Fzo-like conserved region
         (766 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   5.9  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   5.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   7.8  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 259 IFILNNRWDASASEPEYMEQVRTQHANRCVDFLSRELRVCSPKEAEERIFFIS 311
           + I N+     ASE   M + R    N+ + FL++ LR+        R  FIS
Sbjct: 170 VMIFNSALSYKASEIVVMLRSRFAILNKQIRFLNQYLRLKPEGRISNRRVFIS 222


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 259 IFILNNRWDASASEPEYMEQVRTQHANRCVDFLSRELRVCSPKEAEERIFFIS 311
           + I N+     ASE   M + R    N+ + FL++ LR+        R  FIS
Sbjct: 188 VMIFNSALSYKASEIVVMLRSRFAILNKQIRFLNQYLRLKPEGRISNRRVFIS 240


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 40  QIFVRAKKKINDIFVEIDDYVKDAVTFMHAVSGENGI-ATPQDMGNVESY 88
           Q+F + K+    I +E  ++++  V F+  +   NGI A P+ +  + ++
Sbjct: 477 QVFEKLKQARMTINLEKSNFIQKEVKFLGHILTINGIKADPEKISAIRNF 526


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,886
Number of Sequences: 317
Number of extensions: 5923
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 4
length of query: 766
length of database: 114,650
effective HSP length: 62
effective length of query: 704
effective length of database: 94,996
effective search space: 66877184
effective search space used: 66877184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)