GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002819-TA|BGIBMGA002819-PA|IPR011046|WD40-like,
IPR001680|WD-40 repeat
         (895 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    27   0.75 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   3.0  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    25   3.0  
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    24   5.3  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    24   5.3  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    24   5.3  

>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 0.75
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 753 YKVYQINPSTEIDFEEFVKLYINHRPAF 780
           YK+ Q+ P+ + +  EF+ + +N+ P F
Sbjct: 286 YKIRQVFPNEKKNISEFINVVLNNYPDF 313


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 364  PRSYQVFDPKCTNNQGVGFVDFATEKLVTVLNSKRSYALALSVHPEKPYVCIGYD 418
            P+ +QV   K  ++    F  + TE L      K  Y L+ +V P K  +  GYD
Sbjct: 1522 PKCWQVDCKKGPDSDKQAFAAWVTE-LKQAFKPK-GYLLSAAVSPSKTVIDAGYD 1574


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 782 YRYKKIRDAFAHFAYLDNEQLAINRNGL 809
           ++Y K+   FAHF  L    + I +NGL
Sbjct: 20  FKYLKVLVTFAHFICLFPITINIRKNGL 47


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 22  LGRGRLYSMSLSQIKKYSESSVEFQHKL 49
           + R  L ++ L++++KY    + F HKL
Sbjct: 108 ISRDYLNNVLLTELEKYPNVKIYFNHKL 135


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 22  LGRGRLYSMSLSQIKKYSESSVEFQHKL 49
           + R  L ++ L++++KY    + F HKL
Sbjct: 108 ISRDYLNNVLLTELEKYPNVKIYFNHKL 135


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 22  LGRGRLYSMSLSQIKKYSESSVEFQHKL 49
           + R  L ++ L++++KY    + F HKL
Sbjct: 108 ISRDYLNNVLLTELEKYPNVKIYFNHKL 135


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.138    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,212
Number of Sequences: 317
Number of extensions: 10183
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 6
length of query: 895
length of database: 114,650
effective HSP length: 63
effective length of query: 832
effective length of database: 94,679
effective search space: 78772928
effective search space used: 78772928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)