Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002819-TA|BGIBMGA002819-PA|IPR011046|WD40-like,
IPR001680|WD-40 repeat
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0990 - 29955207-29955551,29955639-29955813,29955887-299560... 36 0.19
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 34 0.44
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 34 0.44
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 34 0.44
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 34 0.58
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 34 0.58
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 33 1.3
06_03_1454 - 30261240-30261470,30261896-30262615,30262700-302628... 32 2.3
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 32 2.3
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 32 2.3
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 32 2.3
02_02_0646 + 12606569-12606582,12608702-12608750,12609387-126095... 30 7.1
09_02_0258 - 6380702-6380758,6380767-6380794,6381352-6381467,638... 30 9.4
08_02_0924 - 22660615-22660623,22661035-22661193,22661664-226625... 30 9.4
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 30 9.4
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 30 9.4
>04_04_0990 -
29955207-29955551,29955639-29955813,29955887-29956017,
29956317-29956436,29956908-29956984,29957070-29957316,
29957413-29957569,29958191-29958309,29958421-29958555,
29958636-29958921,29959009-29959211,29959732-29959881,
29960084-29960266,29960931-29961278
Length = 891
Score = 35.5 bits (78), Expect = 0.19
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 59 GYNPKVGVINLNNNGSTSMFYA-ASNCGVIYNWTVNQMR---ILQGHRHMISCISS--DR 112
GYN ++ ++L G + A A+N + + V M +L GH ++ CI +
Sbjct: 364 GYNDEI--LDLKFVGEDEQYLAVATNLEQVRVYDVASMSCSYVLSGHTEIVVCIDTCISS 421
Query: 113 QGKWLVTADSGPENVIIIWDSVDYFPQRTIFSPHGKTKISKVVMSADAKYLLSLGYSEKT 172
GK LV S ++ + +WD ++ I H I V S +K G S++T
Sbjct: 422 SGKTLVVTGS-KDSTVRLWD-MERRSCIGIGKGH-LGAIGSVAFSKKSKNFFVSGSSDRT 478
Query: 173 TLNWWDWSSGLDD 185
+ W W LDD
Sbjct: 479 -IKIWSWDDTLDD 490
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 34.3 bits (75), Expect = 0.44
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 390 LVTVLNSKRSYALALSVHPEKPYVCIGYDNGIVEMYNFVQHKLFVRLDLRD 440
++T +K + LS HP +P++ +G+++M+++ L R D D
Sbjct: 1 MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHD 51
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 34.3 bits (75), Expect = 0.44
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 390 LVTVLNSKRSYALALSVHPEKPYVCIGYDNGIVEMYNFVQHKLFVRLDLRD 440
++T +K + LS HP +P++ +G+++M+++ L R D D
Sbjct: 1 MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHD 51
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 34.3 bits (75), Expect = 0.44
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 390 LVTVLNSKRSYALALSVHPEKPYVCIGYDNGIVEMYNFVQHKLFVRLDLRD 440
++T +K + LS HP +P++ +G+++M+++ L R D D
Sbjct: 1 MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHD 51
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 33.9 bits (74), Expect = 0.58
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 87 IYNW-TVNQMRILQGHRHMISCISSDRQGKWLVTADSGPENVIIIWDSVDYFPQRTIFSP 145
+YN+ T++++++ + H I C++ ++++ S + +I +WD + IF
Sbjct: 78 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLS--SSDDMLIKLWDWDKGWMCTQIFEG 135
Query: 146 HGKTKISKVVMSADAKYLLSLGYSEKTTLNWWDWSSGLDDPDATLD 191
H + D S T + WS G DP+ TLD
Sbjct: 136 HSHYVMQVTFNPKDTNTFASASLDRTTKI----WSLGSPDPNFTLD 177
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 33.9 bits (74), Expect = 0.58
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 114 GKWLVTADSGPENVIIIWDSVDYFPQRTIFSPHGKTKISKVVMSADAKYLLSLGYSEKTT 173
G VTA + + IWD + R I H +++ + + D +Y+LS G + +
Sbjct: 310 GSLYVTASK--DGSLRIWDGISAECVRPIIGAHASAEVTSAIFTKDERYVLSCG--KDSC 365
Query: 174 LNWWDWSSG 182
+ W+ SG
Sbjct: 366 IKLWEVGSG 374
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 32.7 bits (71), Expect = 1.3
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 94 QMRILQGHRHMISCISSDRQGKWLVTADSGPENVIIIWDSVDYFPQRTIFSPHGKTKISK 153
++R GH++++ C+ ++ G W++TA + +I ++D + + F H K +
Sbjct: 302 ELRSFHGHKNIVQCVKWNQNGNWVLTASK--DQIIKLYD-IRSMKELESFRGHNKDVTAL 358
Query: 154 VVMSADAKYLLSLGY 168
+Y +S Y
Sbjct: 359 AWHPFHEEYFVSGSY 373
>06_03_1454 -
30261240-30261470,30261896-30262615,30262700-30262843,
30262953-30263204,30263542-30263751
Length = 518
Score = 31.9 bits (69), Expect = 2.3
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 82 SNCGVIYNWTVNQ---MRILQGHRHMISCISSDRQGKWLVTADSGPENVIIIW 131
S+CG ++ W MR+++G + +++C+ G +V A+ G + I IW
Sbjct: 382 SDCGRVFIWRKKDGELMRVMKGDKQIVNCVEQHPYG--IVIANCGIDKDIKIW 432
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 31.9 bits (69), Expect = 2.3
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 87 IYNW-TVNQMRILQGHRHMISCISSDRQGKWLVTADSGPENVIIIWDSVDYFPQRTIFSP 145
+YN+ T++++++ + H I C++ ++++ S + +I +WD + IF
Sbjct: 96 VYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLS--SSDDMLIKLWDWDKGWMCTQIFEG 153
Query: 146 HGKTKISKVVMSADAKYLLSLGYSEKTTLNWWDWSSGLDDPDATLD 191
H + D S + WS G DP+ TLD
Sbjct: 154 HSHYVMQVTFNPKDTNTFASASLDRTVKV----WSLGSPDPNFTLD 195
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 31.9 bits (69), Expect = 2.3
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 87 IYNW-TVNQMRILQGHRHMISCISSDRQGKWLVTADSGPENVIIIWDSVDYFPQRTIFSP 145
+YN+ T++++++ + H I C++ ++++ S + +I +WD + IF
Sbjct: 110 VYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLS--SSDDMLIKLWDWDKGWMCTQIFEG 167
Query: 146 HGKTKISKVVMSADAKYLLSLGYSEKTTLNWWDWSSGLDDPDATLD 191
H + D S + WS G DP+ TLD
Sbjct: 168 HSHYVMQVTFNPKDTNTFASASLDRTVKV----WSLGSPDPNFTLD 209
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 31.9 bits (69), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 99 QGHRHMISCISSDRQGKWLVTADSGPENVIIIWD 132
+GHR I I G+W+VT G +N++ +WD
Sbjct: 237 KGHRGAIRTIRFTPDGRWVVT--GGEDNIVKVWD 268
>02_02_0646 +
12606569-12606582,12608702-12608750,12609387-12609546,
12610372-12610519,12610610-12610687,12611935-12612019,
12612098-12612157
Length = 197
Score = 30.3 bits (65), Expect = 7.1
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 272 ILVATTRGT-VLVYGYKIEYIEHAGKEDYENLKFIKMLKVEKRTINVIKSIDGVITTGNS 330
IL+ + G V V + ++ +A K +E F K LK R+ I DG I
Sbjct: 30 ILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFDGYIVVYKF 89
Query: 331 VGEIHFY 337
V ++HF+
Sbjct: 90 VQDLHFF 96
>09_02_0258 -
6380702-6380758,6380767-6380794,6381352-6381467,
6382318-6382435,6382542-6382721,6383214-6383313,
6384315-6384618
Length = 300
Score = 29.9 bits (64), Expect = 9.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 455 CNYEVTVPPISVSCLKYSHSGMHLACG 481
CN V VPP+ S +H LACG
Sbjct: 242 CNKNVLVPPLQKSVFSNAHPSKKLACG 268
>08_02_0924 -
22660615-22660623,22661035-22661193,22661664-22662539,
22663009-22663119,22663528-22663556,22663690-22663762,
22664804-22665100,22665193-22665345,22665979-22666068,
22667520-22667809,22667860-22668349
Length = 858
Score = 29.9 bits (64), Expect = 9.4
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 212 FLLLTKHNIWIGVPRKVFVMERG---VLKETDKYELKIKKIETKTG 254
FL+LT+ ++ + +F M+RG VL++ + E+++ ++TK+G
Sbjct: 451 FLILTQWSVALQKAHNIFYMDRGQNFVLQQFELTEIELDVLQTKSG 496
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 29.9 bits (64), Expect = 9.4
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 646 NYATTMTLSTILGPRYEHP--VRRMLLTAREEDNGKQQYLIFATKNVVGIQKMPIDGNPW 703
N A + +S + R E P +R + L+++ E +QQ + AT V K P++ PW
Sbjct: 343 NTAISSQVSKSVTERSEEPTMLRPLSLSSQNEATPRQQRNLDATIKNVPNSKFPVETAPW 402
Query: 704 K 704
K
Sbjct: 403 K 403
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 29.9 bits (64), Expect = 9.4
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 95 MRILQGHRHMISCISSDRQGKWLVTADSGPENVIIIWDSVDYFPQRTIFSPHGKTKISKV 154
+++L+ HR + + GK+L +A + +I D + + H K + V
Sbjct: 223 VQVLRAHRDEVWFLQFSNNGKYLASASNDKSAIIWKVDEDGELLLKHTLTGHDK-PVMMV 281
Query: 155 VMSADAKYLLSLGYSEKTTLNWWDWSSG 182
S D LL+ G E + WD SG
Sbjct: 282 AWSPDDCQLLTCGMEE--VIRCWDVESG 307
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.138 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,387,338
Number of Sequences: 37544
Number of extensions: 1147476
Number of successful extensions: 2223
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2200
Number of HSP's gapped (non-prelim): 38
length of query: 895
length of database: 14,793,348
effective HSP length: 89
effective length of query: 806
effective length of database: 11,451,932
effective search space: 9230257192
effective search space used: 9230257192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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