GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002818-TA|BGIBMGA002818-PA|IPR012999|Pyridine
nucleotide-disulphide oxidoreductase, class I, active site,
IPR013027|FAD-dependent pyridine nucleotide-disulphide oxidoreductase,
IPR004099|Pyridine nucleotide-disulphide oxidoreductase dimerisation
region, IPR001327|Pyridine nucleotide-disulphide oxidoreductase,
NAD-binding region, IPR006338|Thioredoxin and glutathione reductase
selenoprotein, IPR001100|Pyridine nucleotide-disulphide
oxidoreductase, class I, IPR000815|Mercuric reductase
         (462 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   2.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   7.1  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/46 (21%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 110 LTEAVQNHIKSVNWVTRVDLREKKIDYVNGLGEFKDAHTLIATLKN 155
           L+  +++ I ++ W++ ++ R   +D+   + +FKD   +  T+K+
Sbjct: 56  LSHFIESGITAI-WLSPIN-RSPMVDFGYDISDFKDVDPIFGTIKD 99


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 83  LGESIHEAVAYGWEVPSLDAIKINWPALTEAVQNHIKSVN 122
           L + +++ VA G     +DA K  WP+    + + ++++N
Sbjct: 189 LVDFLNDLVAIGVAGFRVDAAKHMWPSDLRTIYSRVRNLN 228


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,339
Number of Sequences: 429
Number of extensions: 5067
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 462
length of database: 140,377
effective HSP length: 60
effective length of query: 402
effective length of database: 114,637
effective search space: 46084074
effective search space used: 46084074
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)