GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002816-TA|BGIBMGA002816-PA|IPR013838|Beta tubulin,
autoregulation binding site, IPR008954|Moesin
         (296 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   1.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   1.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   1.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   1.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.5  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 107 EYAQLQREHKEKCSTHERLKREHASVER 134
           EY +  R++++ C+  E+L  E  S +R
Sbjct: 11  EYRKKDRQYEKLCNEEEKLLEERTSRKR 38


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 107 EYAQLQREHKEKCSTHERLKREHASVER 134
           EY +  R++++ C+  E+L  E  S +R
Sbjct: 11  EYRKKDRQYEKLCNEEEKLLEERTSRKR 38


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 107 EYAQLQREHKEKCSTHERLKREHASVER 134
           EY +  R++++ C+  E+L  E  S +R
Sbjct: 11  EYRKKDRQYEKLCNEEEKLLEERTSRKR 38


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 107 EYAQLQREHKEKCSTHERLKREHASVER 134
           EY +  R++++ C+  E+L  E  S +R
Sbjct: 11  EYRKKDRQYEKLCNEEEKLLEERTSRKR 38


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 266 NRVEELETENSHLTKRLDKLKNA 288
           N + ++ TE +HLT  ++KLK +
Sbjct: 486 NLMAQVNTEMTHLTNAVNKLKTS 508


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 71  EKFRKAMILNA--QLDN--DKAALGYQLELLKDRIEELGEEYAQLQREHKEKCSTHERL 125
           E ++KA   N    LDN  DK A+   ++LLK  +   G+ +  + +E + +     RL
Sbjct: 54  ELYQKARTFNLVENLDNYNDKEAVNEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRL 112


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,742
Number of Sequences: 429
Number of extensions: 2323
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 296
length of database: 140,377
effective HSP length: 57
effective length of query: 239
effective length of database: 115,924
effective search space: 27705836
effective search space used: 27705836
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)