GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002815-TA|BGIBMGA002815-PA|undefined
         (102 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   0.56 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   1.7  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   3.0  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   3.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   5.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   5.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   6.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
          protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 0.56
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)

Query: 39 NDTI-NEEVKNGQYVEEN 55
          ND I N  + NG Y+EEN
Sbjct: 33 NDNIRNTLISNGDYIEEN 50


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 33  KSHIPVNDTINEEVKNGQY 51
           K H P++D I++E K G Y
Sbjct: 268 KGHRPIDDNIDDEFK-GTY 285


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
          protein.
          Length = 105

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 10 ESGDAFTDGDFEDSGDETVVENNKSHIPVNDTI 42
          ++GD +T      SGD T  +  K ++P  +T+
Sbjct: 41 KNGDEWTFTS--SSGDNTYTKTFKMNVPFEETL 71


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
          protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 10 ESGDAFTDGDFEDSGDETVVENNKSHIPVNDTI 42
          ++GD +T      SGD T  +  K ++P  +T+
Sbjct: 43 KNGDEWTFTS--SSGDNTYTKTFKMNVPFEETL 73


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 37 PVNDTINEEVKNGQYVEENTPKVN 60
          P  D   E+ KN  +  ++T K+N
Sbjct: 53 PHQDHNKEKSKNNHHCNQDTEKLN 76


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 25  DETVVENNKSHIPVNDTINEEVKNGQYVEENTPKVNGHNSQMTPLEGPVLTD 76
           +ET  E +   IP+  ++++   N + +E ++ +  G  ++   L+    +D
Sbjct: 174 NETYDEFDTIRIPIVRSLSKSPPNDEGIETDSDRRKGSIARCWSLDSTAASD 225


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
          receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 28 VVENNKSHIPVNDTINEEVKNGQYVEE 54
          V  NNKS      T+NE   N  YV +
Sbjct: 39 VFSNNKSKKYFEQTLNELNFNLNYVNK 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.305    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,858
Number of Sequences: 429
Number of extensions: 1549
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 102
length of database: 140,377
effective HSP length: 49
effective length of query: 53
effective length of database: 119,356
effective search space:  6325868
effective search space used:  6325868
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.7 bits)
S2: 38 (19.4 bits)