GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002814-TA|BGIBMGA002814-PA|IPR005013|Dolichyl-
diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...   186   6e-48
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    29   1.2  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   4.7  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   6.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   8.2  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score =  186 bits (452), Expect = 6e-48
 Identities = 120/406 (29%), Positives = 200/406 (49%), Gaps = 26/406 (6%)

Query: 6   SVGERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEFGGQVDSEAITKFIDDXXX 65
           S+ +R + +      D +  L +YGE LY NLI+ +      G     +++ +F+     
Sbjct: 41  SLTDRDFDVKTSYIKDESAKLFEYGERLYDNLILLSSQSKSLGPVFSPKSLLEFVQSGGN 100

Query: 66  XXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVTDEGDHTRIVVSPKNLIKAPT 125
                     +  RE+  +    + E  + V+DHFN+    EG    I++    + + P 
Sbjct: 101 LFVVAGSQLPEGIRELGRQLDMFLAERQSVVVDHFNHA---EGSDDIILLD--GISENPY 155

Query: 126 IVGEQNTQ--PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQ--VKEYPHAVGRKT 181
           I+ ++     P+L++G G  +   N    PIL  + T+Y YN K++  V + P A G + 
Sbjct: 156 IISDETRAAGPILYKGIGHYLGP-NPQTQPILRGNPTSYIYNTKTEAEVSKNPWAAGTQL 214

Query: 182 VLIAALQARNNARIVFSGSLFFFSDEAFNSPVTKVHGDKTKSDVSGNKILAIRLTEWVFG 241
            L++ LQ+    R+  SGS+    DE + SP       ++ S    N + A  LT WVF 
Sbjct: 215 FLVSVLQSSTGERVGLSGSIDMLKDE-YLSP-------QSPSFSKSNFLFARDLTNWVFQ 266

Query: 242 ERGRLRVRNVDHHRQGEKEPS---SAYTITDTVVYRIEIEELKNGKWQPFEANDVQLEFV 298
            +G L+  N+ + +  E   S   S Y I D +++ I+I  L++G+  P+ A+DVQLE +
Sbjct: 267 RKGVLQATNMTYGKVAEPLESRNASCYRIKDEMIFSIDISLLEDGQQTPYVADDVQLELI 326

Query: 299 RIDPFIRTTLQKKPNGV-----YEAVFKVPDVWGVYQFKVDYDRVGYTRLYHSTQVSVRP 353
            +DP+ R  L   P+       YEAV   PD +G + FK++Y R G T +   +  ++R 
Sbjct: 327 MLDPYYRVNLVPVPSDSQTSQHYEAVLVAPDHYGDFTFKIEYKRPGLTPIEEKSTFTLRQ 386

Query: 354 LQHTQYERFIPSAYPYYVSSFSMMIGVFLFSFVFLYYKEDQPKTKS 399
             H ++ RF+P AYPYY S FS++    LF  ++L  K  +P   S
Sbjct: 387 FFHNEFPRFLPHAYPYYASCFSVLGAFLLFCGIWLLQKPAKPVVPS 432


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 142 LIVDKDNSLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTVLIAALQARNNARIVFSGSL 201
           L++DKDN + LP    + T  +     +++E+ +  G K V++ +  +    ++  +G L
Sbjct: 54  LVLDKDNCITLP----NETTIAEAELKKIREFQNIYGEKNVILLS-NSIGTRKLDPTGEL 108

Query: 202 FFFSDEAFNSPVTK 215
                + +N PV +
Sbjct: 109 AAHFQQKWNIPVVR 122


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 303 FIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYTRLYHSTQVSVR 352
           F+  T+ ++P G +EA+  +     + +F   YD   Y  +Y S  V  R
Sbjct: 426 FLSVTIPERP-GSFEALHNIITPRSITEFSYRYDNDDYANIYTSFVVKDR 474


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)

Query: 177 VGRKTVLIAALQARNNARI-VFSGS 200
           +G KT ++AAL A  N+R+ VF+GS
Sbjct: 62  IGDKTFIVAALLAFENSRLTVFAGS 86


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 109 DHTRIVVSPKNLIKAPTIVGEQNTQPLLFEGTGLIVDKDNSLVLPILSADSTA---YSYN 165
           DH  ++V PK + K   +   Q   PLL     L +  DN L +P  S    A    + N
Sbjct: 872 DHALLIVKPKTINKRELLKVFQRPIPLLL--LQLFLVDDNGLRIPYSSKQQLAAVSKAAN 929

Query: 166 PKSQVKEYPHAV 177
            K   + YP ++
Sbjct: 930 GKPPSRFYPFSL 941


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,918
Number of Sequences: 5004
Number of extensions: 79558
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 5
length of query: 400
length of database: 2,362,478
effective HSP length: 74
effective length of query: 326
effective length of database: 1,992,182
effective search space: 649451332
effective search space used: 649451332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)