GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002814-TA|BGIBMGA002814-PA|IPR005013|Dolichyl-
diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591...   359   2e-99
06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55...    30   2.8  
09_01_0101 - 1558889-1558989,1559105-1559214,1559300-1559396,156...    29   5.0  
05_05_0258 - 23656473-23657828                                         29   6.6  

>07_01_0771 +
           5917550-5917829,5918390-5918526,5918617-5918742,
           5919168-5919221,5919344-5919457,5919895-5919950,
           5920017-5920058,5920580-5920655,5920765-5920836,
           5920908-5921033,5921117-5921221,5921333-5921416,
           5921636-5921683
          Length = 439

 Score =  359 bits (883), Expect = 2e-99
 Identities = 179/390 (45%), Positives = 245/390 (62%), Gaps = 6/390 (1%)

Query: 5   SSVGERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEFGGQVDSEAITKFIDDXX 64
           +S+  RG+ L F+LADD  L L +YG+YLY  L++FAPS   FGG VD  +I +FID   
Sbjct: 53  ASLQGRGFDLDFRLADDPKLSLHRYGQYLYDGLVLFAPSTPRFGGSVDQNSILEFIDAGH 112

Query: 65  XXXXXXXXXXXDVYREIASECGFEMDEE-SAAVIDHFNYDVTD-EGDHTRIVVSPKNLIK 122
                      D+ R IA+ECG + DE+  A VIDH NY  TD EGDHT  +++  +LI+
Sbjct: 113 DMILAADSSASDLIRGIATECGVDFDEDPEAMVIDHINYAATDAEGDHT--LIAGDDLIQ 170

Query: 123 APTIVGEQNTQ-PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQVKEYPHAVGRKT 181
           +  I+G +  + P+LF G G  V+  NSLVL +LSA  +AYS NPKS++   P   G   
Sbjct: 171 SDVILGSKKIEAPVLFRGIGHAVNPSNSLVLKVLSASPSAYSANPKSKLASPPSLTGSAI 230

Query: 182 VLIAALQARNNARIVFSGSLFFFSDEAFNSPVTKVHGDKTKSDVSGNKILAIRLTEWVFG 241
            L++ +QARNNAR++ SGSL  FS+    S V K  G K + + +GN+      ++WVF 
Sbjct: 231 SLVSVMQARNNARVLISGSLDLFSNRFLKSGVQKA-GSKIRHEKAGNEQFVTETSKWVFH 289

Query: 242 ERGRLRVRNVDHHRQGEKEPSSAYTITDTVVYRIEIEELKNGKWQPFEANDVQLEFVRID 301
           ERG L+  NV H++ GE      Y I D + Y +EI E     W+P+ A+DVQ++F  + 
Sbjct: 290 ERGHLKAVNVKHNKVGETNEPGMYRINDDLEYSVEIYEWSGTSWKPYVADDVQVQFYMMS 349

Query: 302 PFIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYTRLYHSTQVSVRPLQHTQYER 361
           P++  TL     GV+   FKVPDV+GV+QFKV+Y R+GYT L  S Q+ VRP +H +YER
Sbjct: 350 PYVLKTLSTDKKGVFSTSFKVPDVYGVFQFKVEYQRLGYTGLSLSKQIPVRPYRHNEYER 409

Query: 362 FIPSAYPYYVSSFSMMIGVFLFSFVFLYYK 391
           FI SAYPYY +SFS M   F+FSFV+LY+K
Sbjct: 410 FITSAYPYYAASFSTMGAFFIFSFVYLYHK 439


>06_01_0065 +
           549972-550770,551577-552190,552392-552544,552769-552885,
           552972-553076,553269-553334,553430-553494,553577-553778,
           554026-554169,554212-554340
          Length = 797

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 278 EELKNGKW-QPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPDV-W----GVYQF 331
           E  K+  W QP++AN+++   + +D F   T   +P+   E    +PDV W    G+   
Sbjct: 444 ENSKHDWWRQPWDANEIEGLSITMDDFEEATKMVQPSLRREGFSSIPDVTWDDVGGLDSL 503

Query: 332 KVDYDR 337
           + ++DR
Sbjct: 504 RKEFDR 509


>09_01_0101 -
           1558889-1558989,1559105-1559214,1559300-1559396,
           1560462-1560537,1561577-1561666,1561972-1562070
          Length = 190

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 149 SLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTVLIAALQARNNARIVFSGSLFFF 204
           S V+PI   D T  +Y  +SQ +E       K  ++ A +  N A I F+G  F++
Sbjct: 114 STVVPIKRNDGTI-TYQAQSQDEEALVTAASKLNMVLASKDSNTAEISFNGCKFYY 168


>05_05_0258 - 23656473-23657828
          Length = 451

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 336 DRVGYTRLYHSTQVSVRPLQHTQYERFIP 364
           DR    R+ H  +V+V+PLQH  + R +P
Sbjct: 62  DRRTMARVCHDWRVAVKPLQHAPHRRPLP 90


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,115,274
Number of Sequences: 37544
Number of extensions: 457425
Number of successful extensions: 924
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 4
length of query: 400
length of database: 14,793,348
effective HSP length: 84
effective length of query: 316
effective length of database: 11,639,652
effective search space: 3678130032
effective search space used: 3678130032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)