GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002814-TA|BGIBMGA002814-PA|IPR005013|Dolichyl-
diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit
         (400 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical pr...   397   e-111
U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate rece...    30   3.3  
AL117193-11|CAB55000.1|  174|Caenorhabditis elegans Hypothetical...    29   4.4  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    29   5.8  

>Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical
           protein T09A5.11 protein.
          Length = 445

 Score =  397 bits (978), Expect = e-111
 Identities = 204/395 (51%), Positives = 253/395 (64%), Gaps = 5/395 (1%)

Query: 5   SSVGERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEFGGQVDSEAITKFIDDXX 64
           +SV ERG+ LT + ADD+ L L K+G+ ++ +L + AP V  FGG +    I+KF+D   
Sbjct: 41  NSVKERGHELTVRAADDSQLALFKHGQLIFDHLFILAPGVQVFGGSLSPSEISKFVDAGG 100

Query: 65  XXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVT-DEGDHTRIVVSPKNLIKA 123
                      D  REIA+E GFE +E   +VIDH NYD T D GDHT +VV    LI A
Sbjct: 101 NVLVAAGSNIGDALREIAAEHGFEFEEAGTSVIDHHNYDQTLDSGDHTTLVVGKDQLISA 160

Query: 124 PTIVGEQ-NTQPLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTV 182
             IVG      P+LF+G GL+  K N+L L I+ A  TAYSY+PK+     P   G +T+
Sbjct: 161 ELIVGNSAKLHPVLFKGIGLVAGKTNNLALSIVRASGTAYSYDPKAVRATNPSIAGSRTL 220

Query: 183 LIAALQARNNARIVFSGSLFFFSDEAFNSPVTKVHGDKTKSDVSGNKILAIRLTEWVFGE 242
           L+  LQ+RNNARIVF+GS   FS+  F++    V+    +   SGN   A  +T WV  E
Sbjct: 221 LVGGLQSRNNARIVFTGSSELFSNTFFSAKTNSVN-PSVQGAQSGNADFATAITRWVMKE 279

Query: 243 RGRLRVRNVDHHRQGEKEPS-SAYTITDTVVYRIEIEELKNGKWQPFEANDVQLEFVRID 301
            G LRV+ V+HH++GE  P    Y IT+ VVY IEIEELKNGKW PF+  DVQLEFVRID
Sbjct: 280 SGVLRVKTVNHHKKGETVPPVEGYFITEDVVYTIEIEELKNGKWVPFQGKDVQLEFVRID 339

Query: 302 PFIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYTRLYHSTQVSVRPLQHTQYER 361
           PF+R TL K  NG     FK+PDV GV++F VDY RVGYT LY   QVSVRPL HTQYER
Sbjct: 340 PFVRATL-KNSNGRLSVAFKLPDVLGVFKFLVDYRRVGYTHLYDVQQVSVRPLWHTQYER 398

Query: 362 FIPSAYPYYVSSFSMMIGVFLFSFVFLYYKEDQPK 396
           FI SAYPYY SSFSMM G+ LFS V+LY+K+   K
Sbjct: 399 FIRSAYPYYASSFSMMAGLVLFSIVYLYHKDTPVK 433


>U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 4 protein.
          Length = 951

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 260 EPSSAYTITDTVVYRIEIEELKNGKWQPFEANDVQLEFVRIDPFIRTTLQKKPNGVY 316
           EP  +Y  T+T +  +E + L N     F  N   L+ V+ DP ++T L      VY
Sbjct: 242 EPPFSYVFTNTDLSLLE-DFLNNMYGASFHCNITGLQLVKNDPMMKTQLALTSEAVY 297


>AL117193-11|CAB55000.1|  174|Caenorhabditis elegans Hypothetical
           protein Y105C5A.22 protein.
          Length = 174

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 227 GNKILAIRLTEWVFGER--GRLRVRNVDHHRQGEKEPSSAYTITDTVVYRIEIEELKN 282
           G++I+++RL   VFG R   R ++R +  +   +++ SS        VYR   E  +N
Sbjct: 104 GSRIVSLRLCSAVFGRRKERRKKMRKIGRNFSHDRQQSSTSLSAQPPVYRRRSEPRRN 161


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 275 IEIEELKNGKWQPFEAN---DVQL-EFVRIDPFIRTTLQKKPNGVYEAVFKVPDVWGVYQ 330
           IEI   K+  + P +A    D+ L    RI P   + LQ     V+EA+  + D     +
Sbjct: 579 IEISRNKSHIFHPLDAKLVLDILLIASERILPLTSSALQHPCQAVWEAIQNLVD----QE 634

Query: 331 FK-VDYDRVGYTRLYHSTQVSVRP 353
           F  +DYD++G + +  + +V +RP
Sbjct: 635 FDWLDYDQIGTSAMRFALEVYLRP 658


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,846,460
Number of Sequences: 27539
Number of extensions: 419275
Number of successful extensions: 798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 4
length of query: 400
length of database: 12,573,161
effective HSP length: 83
effective length of query: 317
effective length of database: 10,287,424
effective search space: 3261113408
effective search space used: 3261113408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)