GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002814-TA|BGIBMGA002814-PA|IPR005013|Dolichyl-
diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit
         (400 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   3.5  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 268 TDTVVYRIEIEELKNGKW 285
           T T V  ++IE ++NG+W
Sbjct: 46  TQTGVATVDIEAVRNGQW 63



 Score = 22.2 bits (45), Expect = 8.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 203 FFSDEAFNSPVTKVHGDKTKSDVSGNKILAIRLTEW 238
           F SDE   +  + V+  +T++ V+   I A+R  +W
Sbjct: 28  FVSDEMIATAASVVNACQTQTGVATVDIEAVRNGQW 63


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,002
Number of Sequences: 429
Number of extensions: 4558
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 400
length of database: 140,377
effective HSP length: 59
effective length of query: 341
effective length of database: 115,066
effective search space: 39237506
effective search space used: 39237506
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)