Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002813-TA|BGIBMGA002813-PA|IPR001372|Dynein light chain,
type 1
(79 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p... 62 6e-12
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 28 0.13
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 28 0.13
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 28 0.13
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 27 0.39
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 26 0.52
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 26 0.69
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 25 1.6
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 23 4.8
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 23 4.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 23 4.8
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 23 4.8
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 23 6.4
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch... 23 6.4
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 23 6.4
>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 85
Score = 62.5 bits (145), Expect = 6e-12
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECT 60
MSE+M+ EA+ +V A EKF ++AA +K DKKF P +H +VG ++G +T+E
Sbjct: 9 MSEKMQQEAIHAAVQAMEKFTIEKDIAA-FIKREFDKKFSPTWHCIVGRNFGSFVTHESR 67
Query: 61 TICYMYFG 68
Y Y G
Sbjct: 68 HFIYFYLG 75
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 0.13
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 34 SMDKKFGPAFHVVVGESYGFEITYECTTI 62
S + +GPA +V+VGESY +C +
Sbjct: 378 SFAQTWGPAAYVIVGESYPIRYRSKCAAV 406
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 28.3 bits (60), Expect = 0.13
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 34 SMDKKFGPAFHVVVGESYGFEITYECTTI 62
S + +GPA +V+VGESY +C +
Sbjct: 378 SFAQTWGPAAYVIVGESYPIRYRSKCAAV 406
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 0.13
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 34 SMDKKFGPAFHVVVGESYGFEITYECTTI 62
S + +GPA +V+VGESY +C +
Sbjct: 378 SFAQTWGPAAYVIVGESYPIRYRSKCAAV 406
>SPAC3F10.17 |||ribosome biogenesis protein
Ltv1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 26.6 bits (56), Expect = 0.39
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 24 NELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTICYM 65
N+ A R+ ++++D+++G GE+ + I ++ T YM
Sbjct: 44 NKTARRLNRQTLDEEYGSTIRPNEGEAANYGIYFDDTEYDYM 85
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 0.52
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 34 SMDKKFGPAFHVVVGESYGFEITYECTTI 62
S + + PA +V+VGESY +C +
Sbjct: 348 SFSQTWAPAAYVIVGESYPVRYRSKCAAV 376
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 0.69
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 34 SMDKKFGPAFHVVVGESYGFEITYECTTI 62
S + + PA +V+VGESY +C +
Sbjct: 380 SFAQTWAPAAYVIVGESYPIRYRSKCAAV 408
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 1.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 39 FGPAFHVVVGESYGFEITYECTTI 62
+ PA +V+VGESY +C +
Sbjct: 387 WAPAAYVIVGESYPVRYRSKCAAV 410
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 23.0 bits (47), Expect = 4.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 19 KFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITY 57
KFA N+ + K K PA ++ G GF T+
Sbjct: 82 KFASNDTYSKLWRKVFKRKDSSPALSILTGSCAGFTETF 120
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 23.0 bits (47), Expect = 4.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 31 VKESMDKKFGPAFHVVV 47
VKE D+K+G H+ V
Sbjct: 533 VKEECDEKYGKVVHIAV 549
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.0 bits (47), Expect = 4.8
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 63 CYMYFGGNQAICIW 76
CY++FG N+ + W
Sbjct: 555 CYVFFGSNEHLMNW 568
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 23.0 bits (47), Expect = 4.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 34 SMDKKFGPAFHVVVGESYGFEITY 57
S K FGP F + ES+G + Y
Sbjct: 121 SFVKNFGPGFVSTLQESFGTGVYY 144
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 22.6 bits (46), Expect = 6.4
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 30 MVKESMDKKFGPAFHVVVGESYGFEITYECTTICYMYFGGNQAICIWKCS 79
++ S+D G + V G G + YE Y++ G + + +W+ S
Sbjct: 246 LLGNSIDVLSGRWIYPVSGVGAGIDSFYEYAFKSYIFLGDPRYLEVWQKS 295
>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 22.6 bits (46), Expect = 6.4
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 10 VELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYEC 59
V + +T + FA NE+ M+ + M + A + S G +I EC
Sbjct: 73 VNIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGGKIEIEC 122
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 22.6 bits (46), Expect = 6.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 12 LSVTACEKFAQNNELAARMVKESMDK 37
L +C K +Q + LAAR+ E+ K
Sbjct: 7 LEAKSCFKSSQTSHLAARVAMENPQK 32
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.132 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,729
Number of Sequences: 5004
Number of extensions: 10670
Number of successful extensions: 32
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 15
length of query: 79
length of database: 2,362,478
effective HSP length: 59
effective length of query: 20
effective length of database: 2,067,242
effective search space: 41344840
effective search space used: 41344840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)
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