Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002813-TA|BGIBMGA002813-PA|IPR001372|Dynein light chain,
type 1
(79 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660 44 2e-05
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749 41 1e-04
01_05_0324 - 20946774-20946935,20947301-20947780 40 3e-04
02_04_0361 - 22359278-22359439,22362291-22362728 34 0.017
01_06_0783 + 31975261-31975398,31975583-31975726 31 0.12
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489 28 1.1
06_01_0772 + 5770502-5770619,5771035-5772335 28 1.1
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 25 5.8
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 25 7.7
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 25 7.7
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262... 25 7.7
01_01_1057 + 8349384-8349827 25 7.7
>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
Length = 111
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1 MSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFE 54
M EEMR EA +++ A EK ++A +K+ DK GP +H +VG ++ E
Sbjct: 54 MKEEMRQEAFDIARVAFEKHTMEKDIA-EYIKKEFDKNHGPTWHCIVGRNFDKE 106
>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
Length = 135
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 1 MSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYG 52
M EEMR EA ++ A EK ++ +KE DK GP +H +VG ++G
Sbjct: 66 MKEEMRQEAFDIDRVAFEKHTMEKDIV-EYIKE-FDKNHGPTWHCIVGHNFG 115
>01_05_0324 - 20946774-20946935,20947301-20947780
Length = 213
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 28 ARMVKESMDKKFGPAFHVVVGESYGFEITYECTTICYMYFGGNQAI 73
A VK+ DK +GP +H +VG SYG +T+ C++YF ++ I
Sbjct: 155 AHDVKKEFDKVYGPTWHCIVGTSYGSFVTH--ARGCFLYFSMDKII 198
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 33.9 bits (74), Expect = 0.017
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 5 MRTEAVELSVTACEKFAQ-NNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTIC 63
M+ AV L+ A + +++ A +K+ D +GPA+H +VG +G +T+
Sbjct: 117 MQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDATYGPAWHCIVGTGFGSYVTHSVGGFL 176
Query: 64 Y 64
Y
Sbjct: 177 Y 177
>01_06_0783 + 31975261-31975398,31975583-31975726
Length = 93
Score = 31.1 bits (67), Expect = 0.12
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 1 MSEEMRTEAVELSVTACEKF-AQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYEC 59
M +M+ +A+ + A ++F + A +K+ D GP + VVG S+G T+
Sbjct: 13 MPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVVGASFGCYFTHSK 72
Query: 60 TTICYMYFG 68
+ Y G
Sbjct: 73 GSFIYFKLG 81
>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
Length = 282
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 8 EAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTICY 64
E E S+ E ++ELA ++ +D+ A ++ VG ++ F +T+E +C+
Sbjct: 174 EKPEASILEFECHFNDDELAIESMR-MLDQNNSDAENLYVGPTFHFPLTFEFLIMCF 229
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 17 CEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFE 54
C FAQN L ++++ + + FG F + G+ +GF+
Sbjct: 432 CMTFAQNPALRSQILGNRVTRSFGTTFD-IQGKQFGFK 468
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 48 GESYGFEITYECTTICYMY 66
G+ Y +T +CT CY+Y
Sbjct: 224 GKKYFMTLTDDCTRFCYVY 242
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 36 DKKFGPAFHVVVGESYGFEITYECTTICYMYFGG 69
+++ G GESYG + + C IC +F G
Sbjct: 204 EEEHGETLCGACGESYGADEFWICCDICEKWFHG 237
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 7 TEAVELSVTACEKFAQNNELAARMVKESMDKKFGP 41
T + +S K A++ LAARMV+E +D+ + P
Sbjct: 417 TYNIIISAMFMRKRAEDMVLAARMVEEMVDRGYLP 451
>02_01_0365 +
2621302-2621711,2622442-2622620,2623381-2623496,
2623626-2623964,2624113-2624307,2624505-2624594,
2625288-2625518,2625632-2625952
Length = 626
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 13 SVTACEKFAQNNELAARMVKESMDKKFGPAF 43
+V K NEL AR VKE++ + G +F
Sbjct: 411 AVEVLRKAFAENELPARSVKENLSTELGISF 441
>01_01_1057 + 8349384-8349827
Length = 147
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 47 VGESYGFEITYECTTICYMYFGGNQAI 73
+GE+ GFE+T YM GN+ +
Sbjct: 106 IGEALGFELTGMTRKDKYMMLAGNEGV 132
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.132 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,337
Number of Sequences: 37544
Number of extensions: 67886
Number of successful extensions: 165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 12
length of query: 79
length of database: 14,793,348
effective HSP length: 58
effective length of query: 21
effective length of database: 12,615,796
effective search space: 264931716
effective search space used: 264931716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)
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