GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002813-TA|BGIBMGA002813-PA|IPR001372|Dynein light chain,
type 1
         (79 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-8|CAJ14149.1|  247|Anopheles gambiae putative signal pe...    23   1.7  
AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dp...    22   3.0  

>CR954256-8|CAJ14149.1|  247|Anopheles gambiae putative signal
          peptidase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 52 GFEITYECTTICYMYFGGNQAICI 75
          G+ + Y C T C   + G+  +C+
Sbjct: 13 GYIVQYGCITHCTFEYLGDFVVCV 36


>AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dpp
           protein.
          Length = 474

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 50  SYGFEITYECTTIC 63
           ++GFE  YE T +C
Sbjct: 406 NHGFEAVYELTKMC 419


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,729
Number of Sequences: 2123
Number of extensions: 2245
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 79
length of database: 516,269
effective HSP length: 52
effective length of query: 27
effective length of database: 405,873
effective search space: 10958571
effective search space used: 10958571
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)