Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002813-TA|BGIBMGA002813-PA|IPR001372|Dynein light chain,
type 1
(79 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light ch... 58 1e-09
Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical pr... 41 9e-05
AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical... 40 3e-04
U55369-2|AAK52183.2| 526|Caenorhabditis elegans Udp-glucuronosy... 29 0.52
AF099673-1|AAC97508.1| 315|Caenorhabditis elegans thymidylate s... 27 1.6
AC006708-20|AAF60422.1| 312|Caenorhabditis elegans Hypothetical... 27 1.6
U58738-3|AAQ81272.1| 349|Caenorhabditis elegans Apex-related ge... 27 2.1
U58738-2|AAQ81271.1| 357|Caenorhabditis elegans Apex-related ge... 27 2.1
U50143-1|AAB02199.1| 349|Caenorhabditis elegans ARG-1 protein. 27 2.1
U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein. 26 2.8
AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior phar... 26 2.8
AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical ... 26 2.8
Z49909-5|CAD59140.1| 594|Caenorhabditis elegans Hypothetical pr... 26 3.6
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 26 3.6
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 26 3.6
L23649-1|AAA27912.1| 568|Caenorhabditis elegans Hypothetical pr... 25 4.8
AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical ... 25 4.8
AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical ... 25 4.8
Z73428-5|CAA97808.2| 209|Caenorhabditis elegans Hypothetical pr... 25 6.4
AL132951-9|CAC44304.3| 553|Caenorhabditis elegans Hypothetical ... 25 6.4
U00047-3|AAA50689.2| 225|Caenorhabditis elegans Hypothetical pr... 25 8.4
>U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light
chain protein 1 protein.
Length = 89
Score = 57.6 bits (133), Expect = 1e-09
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 1 MSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECT 60
MS++M+ +A++ + A EK+ ++AA +K+ DKK+ P +H +VG ++G +T+E
Sbjct: 13 MSDDMQQDAIDCATQALEKYNIEKDIAA-YIKKEFDKKYNPTWHCIVGRNFGSYVTHETK 71
Query: 61 TICYMYFGGNQAICIWK 77
Y Y G AI ++K
Sbjct: 72 HFIYFYL-GQVAILLFK 87
>Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical
protein M18.2 protein.
Length = 90
Score = 41.1 bits (92), Expect = 9e-05
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 3 EEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYE 58
E+ + + V V ++ ++ A VKE +DKKFG +HV+ G+ +G ++YE
Sbjct: 14 EDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYE 69
>AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical
protein Y73B6BL.43 protein.
Length = 186
Score = 39.5 bits (88), Expect = 3e-04
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1 MSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECT 60
M M EA L+ + + +++A R +K + D+++GP +H + G+ +G +T+E
Sbjct: 65 MPRHMEQEACSLAAKSIMTYHLEHDIA-RHLKMAFDREYGPDWHCICGKHFGSFVTFEPD 123
Query: 61 TICYMYFG 68
+ Y G
Sbjct: 124 SFIYFRIG 131
>U55369-2|AAK52183.2| 526|Caenorhabditis elegans
Udp-glucuronosyltransferase protein48 protein.
Length = 526
Score = 28.7 bits (61), Expect = 0.52
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 17 CEKFAQNNELAARMVKESMDKKFGPAFHV 45
CE+ N EL ++ KE D FG H+
Sbjct: 119 CEEMVTNKELIEKLKKEKFDAYFGEQIHL 147
>AF099673-1|AAC97508.1| 315|Caenorhabditis elegans thymidylate
synthase protein.
Length = 315
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 15 TACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTIC 63
T C+ + N EL+ ++ + S D G F++ SYG +T+ +C
Sbjct: 199 TMCQFYVDNGELSCQLYQRSGDMGLGVPFNLA---SYGL-LTHMIAKVC 243
>AC006708-20|AAF60422.1| 312|Caenorhabditis elegans Hypothetical
protein Y110A7A.4 protein.
Length = 312
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 15 TACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTIC 63
T C+ + N EL+ ++ + S D G F++ SYG +T+ +C
Sbjct: 196 TMCQFYVDNGELSCQLYQRSGDMGLGVPFNLA---SYGL-LTHMIAKVC 240
>U58738-3|AAQ81272.1| 349|Caenorhabditis elegans Apex-related genes
protein 1, isoformb protein.
Length = 349
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 23 NNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTICYMYFGGNQA--ICI----- 75
N LA + D K+ +V+ + GF +T +C + G + CI
Sbjct: 91 NEMLALEQHRAPSDTKWNTGLPIVIETTLGFNVTVHLRNVCTSNYYGKRCNRYCIPSPAL 150
Query: 76 -WKCS 79
W+CS
Sbjct: 151 HWECS 155
>U58738-2|AAQ81271.1| 357|Caenorhabditis elegans Apex-related genes
protein 1, isoforma protein.
Length = 357
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 23 NNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTICYMYFGGNQA--ICI----- 75
N LA + D K+ +V+ + GF +T +C + G + CI
Sbjct: 91 NEMLALEQHRAPSDTKWNTGLPIVIETTLGFNVTVHLRNVCTSNYYGKRCNRYCIPSPAL 150
Query: 76 -WKCS 79
W+CS
Sbjct: 151 HWECS 155
>U50143-1|AAB02199.1| 349|Caenorhabditis elegans ARG-1 protein.
Length = 349
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 23 NNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTICYMYFGGNQA--ICI----- 75
N LA + D K+ +V+ + GF +T +C + G + CI
Sbjct: 91 NEMLALEQHRAPSDTKWNTGLPIVIETTLGFNVTVHLRNVCTSNYYGKRCNRYCIPSPAL 150
Query: 76 -WKCS 79
W+CS
Sbjct: 151 HWECS 155
>U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein.
Length = 515
Score = 26.2 bits (55), Expect = 2.8
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 8 EAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTICYMYF 67
E ++L + E N LA + + + D ++ +V+ S GF +T + +C +
Sbjct: 78 ERIDLHLKIIEP-TSNEILALQHHRPAADTEWNSDAPIVIETSRGFNVTVQLRNLCSSNY 136
Query: 68 GGNQA--ICI------WKCS 79
G + CI W+CS
Sbjct: 137 HGKRCNRYCIANAKLHWECS 156
>AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior pharynx
in excess protein1 protein.
Length = 515
Score = 26.2 bits (55), Expect = 2.8
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 8 EAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTICYMYF 67
E ++L + E N LA + + + D ++ +V+ S GF +T + +C +
Sbjct: 78 ERIDLHLKIIEP-TSNEILALQHHRPAADTEWNSDAPIVIETSRGFNVTVQLRNLCSSNY 136
Query: 68 GGNQA--ICI------WKCS 79
G + CI W+CS
Sbjct: 137 HGKRCNRYCIANAKLHWECS 156
>AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical
protein T22D1.4 protein.
Length = 586
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 27 AARMVKESMDKKFGPAFHVVVGESYGFEITYECTTICYMYFGGNQ 71
A R+ +S+D + P F + G + I Y + Y+Y GNQ
Sbjct: 287 AVRIRADSVDVEIRPRFPLFGGWKTSYVIGYNLPSEEYLYSKGNQ 331
>Z49909-5|CAD59140.1| 594|Caenorhabditis elegans Hypothetical
protein C14A4.4b protein.
Length = 594
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 1 MSEEMRTEAVELSVTACEKFAQNNELAARMV 31
+S MRT + + EKF + E AA+MV
Sbjct: 155 VSAAMRTFSANIGTVLAEKFRERREEAAQMV 185
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 1 MSEEMRTEAVELSVTACEKFAQNNELAARMV 31
+S MRT + + EKF + E AA+MV
Sbjct: 155 VSAAMRTFSANIGTVLAEKFRERREEAAQMV 185
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 1 MSEEMRTEAVELSVTACEKFAQNNELAARMV 31
+S MRT + + EKF + E AA+MV
Sbjct: 155 VSAAMRTFSANIGTVLAEKFRERREEAAQMV 185
>L23649-1|AAA27912.1| 568|Caenorhabditis elegans Hypothetical
protein C02C2.4 protein.
Length = 568
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 1 MSEEMRTEAVELSVTACEKFAQNNELAARMVKE 33
M+E+ + + +E + E+ NE++A +VKE
Sbjct: 531 MNEKEKLKTIENGIVVVEEVDVKNEMSATLVKE 563
>AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical
protein Y10G11A.2b protein.
Length = 129
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 24 NELAARMVKESMDKKFGPAFHVVVGESYG 52
NE+A+ M K D K+G + VVG ++G
Sbjct: 80 NEIASFM-KRKFDAKYGGHWQCVVGRNFG 107
>AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical
protein Y10G11A.2a protein.
Length = 111
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 24 NELAARMVKESMDKKFGPAFHVVVGESYG 52
NE+A+ M K D K+G + VVG ++G
Sbjct: 62 NEIASFM-KRKFDAKYGGHWQCVVGRNFG 89
>Z73428-5|CAA97808.2| 209|Caenorhabditis elegans Hypothetical
protein M142.5 protein.
Length = 209
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 4 EMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFG 40
E E+ + + E+FAQNN + E +DK G
Sbjct: 71 EALEESEKFARAKTEQFAQNNPVNGTRTTERLDKTLG 107
>AL132951-9|CAC44304.3| 553|Caenorhabditis elegans Hypothetical
protein Y67H2A.2a protein.
Length = 553
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 51 YGFEITYECTTICYMYFGGNQA 72
Y E TY+ T C ++FGG +
Sbjct: 220 YRLEATYDEKTDCLLFFGGGNS 241
>U00047-3|AAA50689.2| 225|Caenorhabditis elegans Hypothetical
protein ZK418.5 protein.
Length = 225
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 53 FEITYECTTICYMYFGGNQAICIWKCS 79
F + + I Y Y G N+ IWKC+
Sbjct: 10 FALAFAPYFIVYKYSGINEYSSIWKCA 36
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.132 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,675
Number of Sequences: 27539
Number of extensions: 63296
Number of successful extensions: 170
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 21
length of query: 79
length of database: 12,573,161
effective HSP length: 59
effective length of query: 20
effective length of database: 10,948,360
effective search space: 218967200
effective search space used: 218967200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)
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