GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002813-TA|BGIBMGA002813-PA|IPR001372|Dynein light chain,
type 1
         (79 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   0.26 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              20   4.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    20   4.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   9.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    19   9.7  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 0.26
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 17  CEKFAQNNELAARMVKESMDKKFGPA 42
           CEK+ +N E   R+ K ++  KF PA
Sbjct: 163 CEKYEKNGETYLRIKKHAV--KFNPA 186


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 19.8 bits (39), Expect = 4.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 6  RTEAVELSVTACEKFAQN 23
          RT + ++SVT CE F  +
Sbjct: 58 RTCSGDISVTKCEGFCNS 75


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
          protein precursor protein.
          Length = 145

 Score = 19.8 bits (39), Expect = 4.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 6  RTEAVELSVTACEKFAQN 23
          RT + ++SVT CE F  +
Sbjct: 58 RTCSGDISVTKCEGFCNS 75


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 18.6 bits (36), Expect = 9.7
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 12  LSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTICYMY 66
           L+    E  A N++ ++  +  +   K+    H ++     F++      IC +Y
Sbjct: 79  LNAKVSEIAALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMDIQICPIY 133


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 18.6 bits (36), Expect = 9.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 65  MYFGGNQAIC 74
           ++F G QAIC
Sbjct: 421 IFFAGYQAIC 430


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,496
Number of Sequences: 429
Number of extensions: 688
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 79
length of database: 140,377
effective HSP length: 47
effective length of query: 32
effective length of database: 120,214
effective search space:  3846848
effective search space used:  3846848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)