Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002812-TA|BGIBMGA002812-PA|IPR006155|Machado-Joseph
disease protein MJD
(241 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 32 0.065
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 27 2.5
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 27 3.2
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 26 4.3
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.3
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha... 26 5.7
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.7
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 7.5
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 25 7.5
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.5
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 25 7.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 9.9
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 32.3 bits (70), Expect = 0.065
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 127 RQIQGNFYNLDSKLDSPQLIGR-SCDLIAYLKEQLDSKEKELF--------IVVSKEVEE 177
R I+G F NL +S +IG S +A EQ +E+E+F I S E+
Sbjct: 347 RMIEGKFSNLPVVDESDAIIGMLSLFHLATAIEQTPEEEEEVFDQAENDAGIEPSNGFED 406
Query: 178 KQ---LWMHQYVLPTPEPNYCPKLPLNGESPSESISSNGQYDYNNRDAECLKLNDVQNHI 234
+Q L V+ + N P LPLN PS + S Y+Y+ R + QN
Sbjct: 407 QQQQLLGNSNEVVENYDVN--PPLPLN-PLPSNTQQSESTYEYSARQLPKPPVQAWQNEN 463
Query: 235 LSTEN 239
LS+ N
Sbjct: 464 LSSNN 468
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 175 VEEKQLWMHQYVLPTPEPNYCPKLPLNGESPSESISSNG 213
VE + +W H ++P P YCP +N E P + ++G
Sbjct: 239 VEGRDVWWHD-IIPK-FPRYCPPAVVNPEHPLFLLYTSG 275
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 29 FQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDINVIMAALQKKGCEAIWFDKRK 88
F RG + + L+ I L N I GLG ++ V + AL ++ ++ W+ K
Sbjct: 244 FVRRGIVAGTSLEKIAENLMDNC-IASDTETTGLGCDNMTVCIVALLQENDKSAWYKKIA 302
Query: 89 D 89
D
Sbjct: 303 D 303
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 4.3
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 27 NLFQTR---GTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDI-NVIMAALQKKGCEAI 82
N+FQ G F+ E + + + W PHRS + + N I++ L+ + CE
Sbjct: 404 NVFQDSILLGNFASQEGNVLKYENGQSCWNGPHRSAIVTVECGVENEIVSVLEAQKCE-- 461
Query: 83 WFDKRKDPGCLDLANICGFILN 104
+ K K P + +LN
Sbjct: 462 YLIKMKSPAACSPDQLKQSLLN 483
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSE 207
WM VLP P P+ P + ++G S E
Sbjct: 239 WMIITVLPVPPPSVRPSISVDGTSRGE 265
>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 5.7
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 71 MAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHWITIRQIQ 130
M + CE + G LD A I IL +P + VML + H+ +
Sbjct: 45 MCQTPETACELTLQPVTRFKGLLDAAIIFSDILVIPQALGMQVVMLEQKGPHFPKPLVVP 104
Query: 131 GNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSK 163
+ L+ + +G D I+ +E+LD +
Sbjct: 105 EDIDLLEKTPNISAKLGYVMDAISLTREKLDGQ 137
>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 157 KEQLDSKEKELFIVVSKEVEEKQLWMHQYVLPTPEPNYCPKLPLNGESPSESISSNGQYD 216
+E + KEKE ++ KE+ +K L + V PE N PK P++ + + Q+
Sbjct: 75 RELMWKKEKEQ-LLKEKELRQKALDKERMVSSKPETN--PKTPISLKELKDIEIYQNQFH 131
Query: 217 YN 218
Y+
Sbjct: 132 YS 133
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 147 GRSCDLIAYLKEQLDSKEKELFIVVSKEVEEKQLWM 182
G + +L+A + Q+ S+ + + ++ K+ E+ WM
Sbjct: 1062 GEASELVADFRNQIKSQTERILVLREKKKEDPISWM 1097
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 19 LCALHALNNLFQTRGTFSKS 38
L ALHALN++F+TR K+
Sbjct: 219 LLALHALNHVFKTRDRVLKN 238
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 188 PTPEPNYCPKLPL-------NGESPSESISSNGQYDYNNRDAE 223
P+PE YC PL NG S S +NG NN A+
Sbjct: 27 PSPEREYCSDCPLQAKGSACNGNSHSLKHETNGASSSNNNVAK 69
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 105 VPSDYKLGFVMLPLRRRHWITIRQI----QGNFYNLDSKLDS 142
+P D + FV L + R+W+ +R I + N Y LD ++ S
Sbjct: 305 LPKDAFIKFVQLLSKNRNWVLMRDIVQLEEYNSYLLDHRIVS 346
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 200 LNGESPSESISSNGQYDYNNRDAECLKLNDVQNHILS 236
L + S + S + D N D+ KLN++QN++++
Sbjct: 33 LRRNNKSSNKLSQNEEDAKNMDSVVQKLNELQNNVVA 69
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,965
Number of Sequences: 5004
Number of extensions: 57854
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 12
length of query: 241
length of database: 2,362,478
effective HSP length: 71
effective length of query: 170
effective length of database: 2,007,194
effective search space: 341222980
effective search space used: 341222980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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