Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002812-TA|BGIBMGA002812-PA|IPR006155|Machado-Joseph
disease protein MJD
(241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0468 - 8712707-8713162,8713551-8713631,8713933-8714031 80 2e-15
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 31 1.1
01_06_1360 - 36650014-36650751,36652529-36652558,36652821-366529... 29 2.6
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756... 28 5.9
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148... 28 5.9
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 28 5.9
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558 28 7.8
>03_02_0468 - 8712707-8713162,8713551-8713631,8713933-8714031
Length = 211
Score = 79.8 bits (188), Expect = 2e-15
Identities = 68/210 (32%), Positives = 97/210 (46%), Gaps = 46/210 (21%)
Query: 5 SAKPTIYHEKQIKELCALHALNNLFQTR-----------------------GT----FSK 37
S +YHE+Q + C LHALNNL Q GT F++
Sbjct: 8 SRSSKVYHERQRLQFCLLHALNNLMQENWNSVLSHLKATAYLSRSLSVLFVGTEKESFTR 67
Query: 38 SELDAICSRL---SPNV--W------INPHRSLLGLGNYDINVIMAALQKKGCEAIWFDK 86
+ELD I L PN W PH ++ GNYD+NV++ AL+ + + IW D
Sbjct: 68 AELDGIAGNLVQIDPNKEHWTPMSLIFKPHHNVF-TGNYDVNVLITALEARKKKVIWHDH 126
Query: 87 RKDPGCLDL--ANICGFILNVPSDYKLGFVMLPLRRRHWITIRQIQGNFYNLDSKLDSPQ 144
RK +DL + G ++NVP G RHW+ IR I G ++NLDS +P+
Sbjct: 127 RKGASSIDLDADALFGLMINVPVRRFRGL----WTGRHWVAIRSINGTWFNLDSDFSAPK 182
Query: 145 LIGRSCDLIAYLKEQLDSKEKELFIVVSKE 174
LIA+L + + S+ E+ IV+ E
Sbjct: 183 EFQDKEKLIAFL-DSILSQGGEVMIVLQDE 211
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 137 DSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIVVSKEVEEKQLWMHQ 184
+ KLD + C+ +A ++E + +E+E+ +VV K VEE++ M +
Sbjct: 183 EQKLDESKP-ATDCNAVAVVEESVCKEEEEVALVVGKGVEEEEAGMSE 229
>01_06_1360 -
36650014-36650751,36652529-36652558,36652821-36652919,
36653664-36653936
Length = 379
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 122 HWITIRQIQGNFYNLDSKLDSPQLIGR 148
HW IR++ G +YN +S +P+ + +
Sbjct: 175 HWFCIRKVNGEWYNFNSLYPAPEHLSK 201
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 10 IYHEKQIKELCALHALNNLFQTRGTFSKSELDAI 43
+YHE Q +LCA+H +N Q FS+ +L A+
Sbjct: 13 LYHEVQEGKLCAVHCVNTTLQ-GPFFSEFDLSAL 45
>04_04_1509 -
34074206-34074398,34074506-34074777,34075411-34075608,
34076092-34076187,34076318-34076500,34076597-34076799,
34076887-34077013,34077098-34077292,34077400-34077540,
34077669-34077812,34077876-34078040,34078776-34078976,
34079049-34079195,34079275-34079427,34079731-34079833,
34079954-34080069,34080168-34080349,34080442-34080541,
34081200-34081527,34081605-34081834,34081979-34082110,
34082787-34082859,34083274-34083338
Length = 1248
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 129 IQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIVVSKEVEEK 178
+ GN + D+ L + + S +++A L+E+L S +KEL SKE+ +K
Sbjct: 692 VSGNHFERDT-LPTVGTVNNSIEMLAKLEEELKSCKKEL--DASKELSKK 738
>04_04_1379 +
33113374-33113529,33114046-33114143,33114811-33114880,
33116668-33116800,33116981-33118940,33119016-33119076,
33119554-33120057
Length = 993
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 129 IQGNFYNLDSKLDSPQLIGRSCDL-IAYLKEQLDSK-EKELFIVVSKEVEEKQ 179
I+ NF NL+ KL+S + S + L++QLD + E+ F + S + KQ
Sbjct: 259 IESNFKNLEVKLESADKLNSSLRYEVCMLQKQLDIRSEERKFNLKSADAAHKQ 311
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 188 PTPEPNYCPKLPLNGESPSESISSNGQYDYNNRDAECLKLND 229
PTP+ P P S S+S Q + NN+ AE K D
Sbjct: 710 PTPQDKSGPYSPAYNGKTSRSVSPGNQVEGNNKAAEVSKNPD 751
>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
Length = 852
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 123 WITIRQIQGNFYNLDS---KLDSPQLIGRSCDLIAYLKEQLDSKEK-----ELFIVVSKE 174
WIT+R Q + L +L P RS ++I + +EQL K + ++F++V +
Sbjct: 240 WITVRDCQSHLQILKDILCQLVLPLNKFRS-EMIGWNEEQLVEKLRCYLRGKIFLIVLHD 298
Query: 175 VEEKQLWMH 183
V ++ +W H
Sbjct: 299 VRDESIWSH 307
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,671,405
Number of Sequences: 37544
Number of extensions: 333653
Number of successful extensions: 645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 10
length of query: 241
length of database: 14,793,348
effective HSP length: 80
effective length of query: 161
effective length of database: 11,789,828
effective search space: 1898162308
effective search space used: 1898162308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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