Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002812-TA|BGIBMGA002812-PA|IPR006155|Machado-Joseph
disease protein MJD
(241 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D31884-1|BAA06682.2| 211|Homo sapiens KIAA0063 protein. 208 1e-53
CR456473-1|CAG30359.1| 202|Homo sapiens dJ508I15.2 protein. 208 1e-53
BC015026-1|AAH15026.1| 202|Homo sapiens Josephin domain contain... 208 1e-53
AL021707-4|CAB42863.1| 202|Homo sapiens protein ( Human DNA seq... 208 1e-53
CR456923-1|CAG33204.1| 202|Homo sapiens KIAA0063 protein. 207 2e-53
BC062416-1|AAH62416.1| 188|Homo sapiens Josephin domain contain... 196 6e-50
BC051380-1|AAH51380.1| 208|Homo sapiens JOSD2 protein protein. 196 6e-50
AF247787-1|AAL95692.1| 188|Homo sapiens hypothetical transmembr... 196 6e-50
U64822-1|AAB63354.1| 373|Homo sapiens josephin MJD1 protein. 53 1e-06
U64821-1|AAB63353.1| 364|Homo sapiens josephin MJD1 protein. 53 1e-06
U64820-1|AAB63352.1| 361|Homo sapiens josephin MJD1 protein. 53 1e-06
S75313-1|AAB33571.1| 360|Homo sapiens MJD1 protein protein. 53 1e-06
BC095402-1|AAH95402.1| 370|Homo sapiens ATXN3 protein protein. 53 1e-06
BC033711-1|AAH33711.1| 370|Homo sapiens ATXN3 protein protein. 53 1e-06
AB038653-2|BAB55646.1| 364|Homo sapiens ataxin-3 protein. 53 1e-06
AB038653-1|BAB55645.1| 361|Homo sapiens ataxin-3 protein. 53 1e-06
AB050195-1|BAB18799.1| 346|Homo sapiens protein ( Homo sapiens ... 42 0.003
AB050194-1|BAB18798.1| 306|Homo sapiens ataxin-3 protein. 36 0.096
AF010404-1|AAC51735.1| 4957|Homo sapiens ALR protein. 31 2.7
AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein. 31 2.7
BC119653-1|AAI19654.1| 296|Homo sapiens zinc finger protein 75a... 31 4.8
BC119652-1|AAI19653.1| 296|Homo sapiens zinc finger protein 75a... 31 4.8
AK056091-1|BAB71092.1| 296|Homo sapiens protein ( Homo sapiens ... 31 4.8
BC111486-1|AAI11487.1| 1250|Homo sapiens FLJ20105 protein protein. 30 6.3
AK074719-1|BAC11160.1| 1106|Homo sapiens protein ( Homo sapiens ... 30 6.3
BC008928-1|AAH08928.1| 215|Homo sapiens GORASP1 protein protein. 30 8.3
>D31884-1|BAA06682.2| 211|Homo sapiens KIAA0063 protein.
Length = 211
Score = 208 bits (508), Expect = 1e-53
Identities = 97/178 (54%), Positives = 125/178 (70%), Gaps = 1/178 (0%)
Query: 5 SAKPTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHR-SLLGLG 63
+A P IYHEKQ +ELCALHALNN+FQ F++ L I RLSPN + PH+ S+LG G
Sbjct: 30 AAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNG 89
Query: 64 NYDINVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHW 123
NYD+NVIMAALQ KG EA+W+DKR+D G + L N+ GFI+N+PS G + LPL+R+HW
Sbjct: 90 NYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW 149
Query: 124 ITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIVVSKEVEEKQLW 181
I +R++ G +YNLDSKL P+ IG +L +LK L K EL +VV +EVE Q W
Sbjct: 150 ICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 207
>CR456473-1|CAG30359.1| 202|Homo sapiens dJ508I15.2 protein.
Length = 202
Score = 208 bits (508), Expect = 1e-53
Identities = 97/178 (54%), Positives = 125/178 (70%), Gaps = 1/178 (0%)
Query: 5 SAKPTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHR-SLLGLG 63
+A P IYHEKQ +ELCALHALNN+FQ F++ L I RLSPN + PH+ S+LG G
Sbjct: 21 AAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNG 80
Query: 64 NYDINVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHW 123
NYD+NVIMAALQ KG EA+W+DKR+D G + L N+ GFI+N+PS G + LPL+R+HW
Sbjct: 81 NYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW 140
Query: 124 ITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIVVSKEVEEKQLW 181
I +R++ G +YNLDSKL P+ IG +L +LK L K EL +VV +EVE Q W
Sbjct: 141 ICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198
>BC015026-1|AAH15026.1| 202|Homo sapiens Josephin domain containing
1 protein.
Length = 202
Score = 208 bits (508), Expect = 1e-53
Identities = 97/178 (54%), Positives = 125/178 (70%), Gaps = 1/178 (0%)
Query: 5 SAKPTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHR-SLLGLG 63
+A P IYHEKQ +ELCALHALNN+FQ F++ L I RLSPN + PH+ S+LG G
Sbjct: 21 AAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNG 80
Query: 64 NYDINVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHW 123
NYD+NVIMAALQ KG EA+W+DKR+D G + L N+ GFI+N+PS G + LPL+R+HW
Sbjct: 81 NYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW 140
Query: 124 ITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIVVSKEVEEKQLW 181
I +R++ G +YNLDSKL P+ IG +L +LK L K EL +VV +EVE Q W
Sbjct: 141 ICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198
>AL021707-4|CAB42863.1| 202|Homo sapiens protein ( Human DNA
sequence from clone RP3-508I15 on chromosome 22q12-13.
).
Length = 202
Score = 208 bits (508), Expect = 1e-53
Identities = 97/178 (54%), Positives = 125/178 (70%), Gaps = 1/178 (0%)
Query: 5 SAKPTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHR-SLLGLG 63
+A P IYHEKQ +ELCALHALNN+FQ F++ L I RLSPN + PH+ S+LG G
Sbjct: 21 AAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNG 80
Query: 64 NYDINVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHW 123
NYD+NVIMAALQ KG EA+W+DKR+D G + L N+ GFI+N+PS G + LPL+R+HW
Sbjct: 81 NYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW 140
Query: 124 ITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIVVSKEVEEKQLW 181
I +R++ G +YNLDSKL P+ IG +L +LK L K EL +VV +EVE Q W
Sbjct: 141 ICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198
>CR456923-1|CAG33204.1| 202|Homo sapiens KIAA0063 protein.
Length = 202
Score = 207 bits (506), Expect = 2e-53
Identities = 97/178 (54%), Positives = 125/178 (70%), Gaps = 1/178 (0%)
Query: 5 SAKPTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHR-SLLGLG 63
+A P IYHEKQ +ELCALHALNN+FQ F++ L I RLSPN + PH+ S+LG G
Sbjct: 21 AAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNG 80
Query: 64 NYDINVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHW 123
NYD+NVIMAALQ KG EA+W+DKR+D G + L N+ GFI+N+PS G + LPL+R+HW
Sbjct: 81 NYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW 140
Query: 124 ITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIVVSKEVEEKQLW 181
I +R++ G +YNLDSKL P+ IG +L +LK L K EL +VV +EVE Q W
Sbjct: 141 ICVREVGGAYYNLDSKLMMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198
>BC062416-1|AAH62416.1| 188|Homo sapiens Josephin domain containing
2 protein.
Length = 188
Score = 196 bits (478), Expect = 6e-50
Identities = 92/175 (52%), Positives = 122/175 (69%), Gaps = 1/175 (0%)
Query: 8 PTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDI 67
PT+YHE+Q ELCA+HALNN+ Q + FS+ D IC RL+P+ +NPHRSLLG GNYD+
Sbjct: 12 PTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDV 70
Query: 68 NVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHWITIR 127
NVIMAALQ G A+W+D+R+ L L + G ILN+PS LG + LPLRRRHW+ +R
Sbjct: 71 NVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLGLLSLPLRRRHWVALR 130
Query: 128 QIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIVVSKEVEEKQLWM 182
Q+ G +YNLDSKL +P+ +G + A+L L E+ +VV+KEVEEK W+
Sbjct: 131 QVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQGLCEVLLVVTKEVEEKGSWL 185
>BC051380-1|AAH51380.1| 208|Homo sapiens JOSD2 protein protein.
Length = 208
Score = 196 bits (478), Expect = 6e-50
Identities = 92/175 (52%), Positives = 122/175 (69%), Gaps = 1/175 (0%)
Query: 8 PTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDI 67
PT+YHE+Q ELCA+HALNN+ Q + FS+ D IC RL+P+ +NPHRSLLG GNYD+
Sbjct: 32 PTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDV 90
Query: 68 NVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHWITIR 127
NVIMAALQ G A+W+D+R+ L L + G ILN+PS LG + LPLRRRHW+ +R
Sbjct: 91 NVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLGLLSLPLRRRHWVALR 150
Query: 128 QIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIVVSKEVEEKQLWM 182
Q+ G +YNLDSKL +P+ +G + A+L L E+ +VV+KEVEEK W+
Sbjct: 151 QVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQGLCEVLLVVTKEVEEKGSWL 205
>AF247787-1|AAL95692.1| 188|Homo sapiens hypothetical transmembrane
protein SBBI54 protein.
Length = 188
Score = 196 bits (478), Expect = 6e-50
Identities = 92/175 (52%), Positives = 122/175 (69%), Gaps = 1/175 (0%)
Query: 8 PTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDI 67
PT+YHE+Q ELCA+HALNN+ Q + FS+ D IC RL+P+ +NPHRSLLG GNYD+
Sbjct: 12 PTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDV 70
Query: 68 NVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHWITIR 127
NVIMAALQ G A+W+D+R+ L L + G ILN+PS LG + LPLRRRHW+ +R
Sbjct: 71 NVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLGLLSLPLRRRHWVALR 130
Query: 128 QIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIVVSKEVEEKQLWM 182
Q+ G +YNLDSKL +P+ +G + A+L L E+ +VV+KEVEEK W+
Sbjct: 131 QVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQGLCEVLLVVTKEVEEKGSWL 185
>U64822-1|AAB63354.1| 373|Homo sapiens josephin MJD1 protein.
Length = 373
Score = 52.8 bits (121), Expect = 1e-06
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Query: 9 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 68
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 2 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 58
Query: 69 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 122
+ ++ +F + L + + + N P +L + R + H
Sbjct: 59 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 118
Query: 123 WITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIV 170
W T+R++ ++NL+S L P+LI S +A QL + +F+V
Sbjct: 119 WFTVRKLGKQWFNLNSLLTGPELI--SDTYLALFLAQLQQEGYSIFVV 164
>U64821-1|AAB63353.1| 364|Homo sapiens josephin MJD1 protein.
Length = 364
Score = 52.8 bits (121), Expect = 1e-06
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Query: 9 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 68
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 69 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 122
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 123 WITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIV 170
W T+R++ ++NL+S L P+LI S +A QL + +F+V
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI--SDTYLALFLAQLQQEGYSIFVV 165
>U64820-1|AAB63352.1| 361|Homo sapiens josephin MJD1 protein.
Length = 361
Score = 52.8 bits (121), Expect = 1e-06
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Query: 9 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 68
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 69 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 122
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 123 WITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIV 170
W T+R++ ++NL+S L P+LI S +A QL + +F+V
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI--SDTYLALFLAQLQQEGYSIFVV 165
>S75313-1|AAB33571.1| 360|Homo sapiens MJD1 protein protein.
Length = 360
Score = 52.8 bits (121), Expect = 1e-06
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Query: 9 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 68
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 69 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 122
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 123 WITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIV 170
W T+R++ ++NL+S L P+LI S +A QL + +F+V
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI--SDTYLALFLAQLQQEGYSIFVV 165
>BC095402-1|AAH95402.1| 370|Homo sapiens ATXN3 protein protein.
Length = 370
Score = 52.8 bits (121), Expect = 1e-06
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Query: 9 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 68
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 69 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 122
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 123 WITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIV 170
W T+R++ ++NL+S L P+LI S +A QL + +F+V
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI--SDTYLALFLAQLQQEGYSIFVV 165
>BC033711-1|AAH33711.1| 370|Homo sapiens ATXN3 protein protein.
Length = 370
Score = 52.8 bits (121), Expect = 1e-06
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Query: 9 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 68
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 69 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 122
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 123 WITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIV 170
W T+R++ ++NL+S L P+LI S +A QL + +F+V
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI--SDTYLALFLAQLQQEGYSIFVV 165
>AB038653-2|BAB55646.1| 364|Homo sapiens ataxin-3 protein.
Length = 364
Score = 52.8 bits (121), Expect = 1e-06
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Query: 9 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 68
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 69 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 122
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 123 WITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIV 170
W T+R++ ++NL+S L P+LI S +A QL + +F+V
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI--SDTYLALFLAQLQQEGYSIFVV 165
>AB038653-1|BAB55645.1| 361|Homo sapiens ataxin-3 protein.
Length = 361
Score = 52.8 bits (121), Expect = 1e-06
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Query: 9 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 68
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 69 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 122
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 123 WITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIV 170
W T+R++ ++NL+S L P+LI S +A QL + +F+V
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI--SDTYLALFLAQLQQEGYSIFVV 165
>AB050195-1|BAB18799.1| 346|Homo sapiens protein ( Homo sapiens
mRNA, partial cds, clone:H2-5, MJD homolog. ).
Length = 346
Score = 41.5 bits (93), Expect = 0.003
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 35/170 (20%)
Query: 19 LCALHALNNLFQTRGTFSKSELDAICSRLSPNVWIN-----------------PHRSLLG 61
LCA H LNNL Q FS EL +I +L + P ++
Sbjct: 4 LCAQHCLNNLLQGE-YFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDD 62
Query: 62 LGNYDINVIMAALQKKGCEAIWFDKRKDPGC-LDLANICGFILNVPSDYKLGFVMLPLRR 120
G + I VI AL+ G E I F+ + +D N FI N YK
Sbjct: 63 TGFFSIQVISNALKFWGLEIIHFNNPEYQMLGIDPINERSFICN----YK---------- 108
Query: 121 RHWITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIV 170
+HW TIR+ +++NL+S L P+LI +C +A +L + +F+V
Sbjct: 109 QHWFTIRKFGKHWFNLNSLLAGPELISDTC--LANFLARLQQQAYSVFVV 156
>AB050194-1|BAB18798.1| 306|Homo sapiens ataxin-3 protein.
Length = 306
Score = 36.3 bits (80), Expect = 0.096
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 63 GNYDINVIMAALQKKGCEAIWFDKRKDPGC-LDLANICGFILNVPSDYKLGFVMLPLRRR 121
G + I VI AL+ G E I F+ + +D N FI N YK
Sbjct: 18 GFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICN----YK----------E 63
Query: 122 HWITIRQIQGNFYNLDSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIV 170
HW T+R++ ++NL+S L P+LI S +A QL + +F+V
Sbjct: 64 HWFTVRKLGKQWFNLNSLLTGPELI--SDTYLALFLAQLQQEGYSIFVV 110
>AF010404-1|AAC51735.1| 4957|Homo sapiens ALR protein.
Length = 4957
Score = 31.5 bits (68), Expect = 2.7
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 151 DLIAYLKEQLDSKEKELFIVVSKEVEEKQLWMHQYVLPTPEPNYCPKLPLNGESPS 206
DL+ + K++L K++ + + +++Q H +LP P P LP G SPS
Sbjct: 2671 DLLEHEKKELQKKQQLSAQLQPAQQQQQQQQQHS-LLPAPGPAQAMSLPHEGSSPS 2725
>AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein.
Length = 5262
Score = 31.5 bits (68), Expect = 2.7
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 151 DLIAYLKEQLDSKEKELFIVVSKEVEEKQLWMHQYVLPTPEPNYCPKLPLNGESPS 206
DL+ + K++L K++ + + +++Q H +LP P P LP G SPS
Sbjct: 2976 DLLEHEKKELQKKQQLSAQLQPAQQQQQQQQQHS-LLPAPGPAQAMSLPHEGSSPS 3030
>BC119653-1|AAI19654.1| 296|Homo sapiens zinc finger protein 75a
protein.
Length = 296
Score = 30.7 bits (66), Expect = 4.8
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 158 EQLDSKEKELFIVVSKEVEEKQLWMHQYVLPTPEPNYCPKLPLNGESPSESISSNGQYDY 217
E LD +K L+ V +E E + + +VLP P+ C + GE P +S + D
Sbjct: 9 ELLDPTQKALYNDVMQENYETVISLALFVLPKPKVISCLE---QGEEPWVQVSPEFK-DS 64
Query: 218 NNRDAECLKL-NDVQNH 233
+ LKL ND +NH
Sbjct: 65 AGKSPTGLKLKNDTENH 81
>BC119652-1|AAI19653.1| 296|Homo sapiens zinc finger protein 75a
protein.
Length = 296
Score = 30.7 bits (66), Expect = 4.8
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 158 EQLDSKEKELFIVVSKEVEEKQLWMHQYVLPTPEPNYCPKLPLNGESPSESISSNGQYDY 217
E LD +K L+ V +E E + + +VLP P+ C + GE P +S + D
Sbjct: 9 ELLDPTQKALYNDVMQENYETVISLALFVLPKPKVISCLE---QGEEPWVQVSPEFK-DS 64
Query: 218 NNRDAECLKL-NDVQNH 233
+ LKL ND +NH
Sbjct: 65 AGKSPTGLKLKNDTENH 81
>AK056091-1|BAB71092.1| 296|Homo sapiens protein ( Homo sapiens
cDNA FLJ31529 fis, clone NT2RI2000421, moderately
similar to ZINC FINGER PROTEIN 75. ).
Length = 296
Score = 30.7 bits (66), Expect = 4.8
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 158 EQLDSKEKELFIVVSKEVEEKQLWMHQYVLPTPEPNYCPKLPLNGESPSESISSNGQYDY 217
E LD +K L+ V +E E + + +VLP P+ C + GE P +S + D
Sbjct: 9 ELLDPTQKALYNDVMQENYETVISLALFVLPKPKVISCLE---QGEEPWVQVSPEFK-DS 64
Query: 218 NNRDAECLKL-NDVQNH 233
+ LKL ND +NH
Sbjct: 65 AGKSPTGLKLKNDTENH 81
>BC111486-1|AAI11487.1| 1250|Homo sapiens FLJ20105 protein protein.
Length = 1250
Score = 30.3 bits (65), Expect = 6.3
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 159 QLDSKEKELFIVVSKEVEEKQLWMHQYVLPTPEPNYCPKLPLNGESPSESISSN 212
+ +S+ KE F++ + + W+ + V P+ CPKL PS +S++
Sbjct: 709 EFESQNKE-FLMEQQRTRNEGAWLREPVFPSSTKKKCPKLNKPQPQPSPLLSTH 761
>AK074719-1|BAC11160.1| 1106|Homo sapiens protein ( Homo sapiens
cDNA FLJ90238 fis, clone NT2RM2000632, weakly similar to
EXCISION REPAIR PROTEIN ERCC-6. ).
Length = 1106
Score = 30.3 bits (65), Expect = 6.3
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 159 QLDSKEKELFIVVSKEVEEKQLWMHQYVLPTPEPNYCPKLPLNGESPSESISSN 212
+ +S+ KE F++ + + W+ + V P+ CPKL PS +S++
Sbjct: 565 EFESQNKE-FLMEQQRTRNEGAWLREPVFPSSTKKKCPKLNKPQPQPSPLLSTH 617
>BC008928-1|AAH08928.1| 215|Homo sapiens GORASP1 protein protein.
Length = 215
Score = 29.9 bits (64), Expect = 8.3
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 137 DSKLDSPQLIGRSCDLIAYLKEQLDSKEKELFIVVSKE--VEEKQLWMHQYVLPTPEPNY 194
D + S Q++ S D + E + K +L + SK E +W H + TP+PN
Sbjct: 134 DYVVGSDQILQESEDFFTLI-ESHEGKPLKLMVYNSKSDSCRESGMW-HWLWVSTPDPNS 191
Query: 195 CPKLP 199
P+LP
Sbjct: 192 APQLP 196
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,947,962
Number of Sequences: 224733
Number of extensions: 1719563
Number of successful extensions: 3176
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3137
Number of HSP's gapped (non-prelim): 39
length of query: 241
length of database: 73,234,838
effective HSP length: 88
effective length of query: 153
effective length of database: 53,458,334
effective search space: 8179125102
effective search space used: 8179125102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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