Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002812-TA|BGIBMGA002812-PA|IPR006155|Machado-Joseph
disease protein MJD
(241 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 24 1.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 24 1.1
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 23 3.3
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 22 4.4
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 22 4.4
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 22 4.4
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 22 4.4
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 22 4.4
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 22 4.4
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 22 4.4
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 4.4
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 4.4
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 22 4.4
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 4.4
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 5.8
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 22 5.8
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 22 5.8
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 22 5.8
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 22 5.8
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 22 5.8
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 21 7.7
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 7.7
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 7.7
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 146 IGRSCDLIAYLKEQLDSKEKELFIVVSKEVEE 177
IG++ +L+A+ +E L S+ K + VV+ E+
Sbjct: 576 IGKNPNLVAHREEDLGSESKTINAVVNALAEQ 607
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 146 IGRSCDLIAYLKEQLDSKEKELFIVVSKEVEE 177
IG++ +L+A+ +E L S+ K + VV+ E+
Sbjct: 544 IGKNPNLVAHREEDLGSESKTINAVVNALAEQ 575
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 22.6 bits (46), Expect = 3.3
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 115 YIEQIPIPVPVPIYCGNFPPRPMGPWISI 143
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 117 YIEQIPIPVPVPIYCGNFPPRPLGPWISI 145
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 117 YIEQIPIPVPVPIYCGNFPPRPLGPWISI 145
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 117 YIEQIPIPVPVPIYCGNFPPRPLGPWISI 145
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 117 YIEQIPIPVPVPIYCGNFPPRPLGPWISI 145
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 112 YIEQIPVPVPVPIYCGNFPPRPMGPWISI 140
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 112 YIEQIPVPVPVPIYCGNFPPRPMGPWISI 140
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 114 YIEQIPVPVPVPVYCGNFPPRPMGPWISI 142
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 4.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 172 SKEVEEKQLWMHQYVLPTPEPNYCPKLPLNGESPSESI 209
SK++ + + Q +P P P YC P P SI
Sbjct: 320 SKKLYYNIINIEQIPVPVPVPIYCGNFPPRPMGPWISI 357
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 4.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 172 SKEVEEKQLWMHQYVLPTPEPNYCPKLPLNGESPSESI 209
SK++ + + Q +P P P YC P P SI
Sbjct: 331 SKKLYYNIINIEQIPVPVPVPIYCGNFPPRPMGPWISI 368
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 22.2 bits (45), Expect = 4.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 350 YIEQIPVPVPVPIYCGNFPPRPMGPWISI 378
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.2 bits (45), Expect = 4.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESP 205
++ Q +P P P YC P P
Sbjct: 357 YIEQIPVPVPVPIYCGNFPPRSMEP 381
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESP 205
++ Q +P P P YC P P
Sbjct: 115 YIEQIPVPVPVPIYCGNFPSRPMGP 139
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESP 205
++ Q +P P P YC P P
Sbjct: 115 YIEQIPVPVPVPIYCGNFPSRPMGP 139
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESP 205
++ Q +P P P YC P P
Sbjct: 115 YIEQIPVPVPVPIYCGNFPSRPMGP 139
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESP 205
++ Q +P P P YC P P
Sbjct: 115 YIEQIPVPVPVPIYCGNFPSRPMGP 139
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESP 205
++ Q +P P P YC P P
Sbjct: 115 YIEQIPVPVPVPIYCGNFPSRPMGP 139
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESP 205
++ Q +P P P YC P P
Sbjct: 115 YIEQIPVPVPVPIYCGNFPSRPMGP 139
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESP 205
++ Q +P P P YC P P
Sbjct: 115 YIEQIPVPVPVPIYCGNFPSRPMGP 139
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.8 bits (44), Expect = 5.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESP 205
++ Q +P P P YC P P
Sbjct: 118 YIEQIPVPVPVPIYCGNFPSRPMGP 142
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 5.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 181 WMHQYVLPTPEPNYCPKLP 199
++ Q +P P P YC P
Sbjct: 332 YIEQIPIPVPVPIYCGNFP 350
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 328 YIEQIPVPVPIPIYCGNFPPRPMGPWISI 356
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 339 YIEQIPVPVPIPIYCGNFPPRPMGPWISI 367
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 339 YIEQIPVPVPIPIYCGNFPPRPMGPWISI 367
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 WMHQYVLPTPEPNYCPKLPLNGESPSESI 209
++ Q +P P P YC P P SI
Sbjct: 328 YIEQIPVPVPIPIYCGNFPPRPMGPWISI 356
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 21.4 bits (43), Expect = 7.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 181 WMHQYVLPTPEPNYCPKLP 199
++ Q +P P P YC P
Sbjct: 123 YIEQIPVPVPVPIYCGNFP 141
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.4 bits (43), Expect = 7.7
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 182 MHQYVLPTPEPNYCPKLPLNGESPSESI 209
+ Q +P P P YC P P SI
Sbjct: 359 IEQIPVPVPVPIYCGNFPPRPMGPWISI 386
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.4 bits (43), Expect = 7.7
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 182 MHQYVLPTPEPNYCPKLPLNGESPSESI 209
+ Q +P P P YC P P SI
Sbjct: 361 IEQIPVPVPVPIYCGNFPPRPMGPWISI 388
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,129
Number of Sequences: 429
Number of extensions: 3734
Number of successful extensions: 44
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 30
length of query: 241
length of database: 140,377
effective HSP length: 56
effective length of query: 185
effective length of database: 116,353
effective search space: 21525305
effective search space used: 21525305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)
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