GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002811-TA|BGIBMGA002811-PA|IPR001197|Ribosomal protein
L10E
         (219 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         84   1e-16
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         31   0.99 
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          28   5.3  
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)                 27   9.2  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 40/50 (80%), Positives = 43/50 (86%)

Query: 115 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 164
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 65  LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 104
           L    I C  Y  KN  +D   +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 117  GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 171
            G  G+P G+V  +      +++++  +W   + E++  A + FP       S+ W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 10  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 69
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 70  IC 71
           +C
Sbjct: 500 MC 501


>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
          Length = 434

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 167 VSKKWGFTKYE---RDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 209
           V K W  T +E   +     LR   R   D CI+ Y+ ++GPL  W
Sbjct: 390 VFKDWNCTYHELLIKANLSTLRN--RRLQDICILMYKVKNGPLPIW 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.141    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,825,592
Number of Sequences: 59808
Number of extensions: 327100
Number of successful extensions: 927
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 5
length of query: 219
length of database: 16,821,457
effective HSP length: 79
effective length of query: 140
effective length of database: 12,096,625
effective search space: 1693527500
effective search space used: 1693527500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)