Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002810-TA|BGIBMGA002810-PA|undefined
         (218 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.55 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    25   0.55 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.73 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 91  RKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLK 132
           R  S P S TS    A+ A  +   ++R   E+ +Q   RLK
Sbjct: 516 RIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLK 557


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 71  VDMIQEMDPLSLLEPK--ARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPE 125
           V  ++E++ L +   K  A     GS  K ++  ERA +L+    YA+ RL ++  E
Sbjct: 78  VHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 12  KKMVIAKTNNEWKSSVGEDANAASNTTH-FRLSDECIQYDN 51
           KK+V+ ++  + KS    D +  SNT+  F LSD+    D+
Sbjct: 76  KKLVLERSKTKSKSPESRDRSNTSNTSKTFILSDKLESSDD 116


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 17/62 (27%), Positives = 25/62 (40%)

Query: 72  DMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRL 131
           +  +EM    LLE K RR R+   P+  T     A L + +    +      P  R T  
Sbjct: 141 EQTEEMYREMLLEHKKRRARRDIHPELNTQGIALADLTQRAQIGQKHKLLIGPSIRITPA 200

Query: 132 KR 133
           K+
Sbjct: 201 KK 202


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 19  TNNEWKSSVGEDANAASNTTHFRLSD 44
           TNN + S V   +    NT  FR SD
Sbjct: 262 TNNLYYSPVASTSLYYVNTEQFRTSD 287


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 19  TNNEWKSSVGEDANAASNTTHFRLSD 44
           TNN + S V   +    NT  FR SD
Sbjct: 262 TNNLYYSPVASTSLYYVNTEQFRTSD 287


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 19  TNNEWKSSVGEDANAASNTTHFRLSD 44
           TNN + S V   +    NT  FR SD
Sbjct: 262 TNNLYYSPVASTSLYYVNTEQFRTSD 287


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.119    0.318 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,619
Number of Sequences: 429
Number of extensions: 1625
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 218
length of database: 140,377
effective HSP length: 55
effective length of query: 163
effective length of database: 116,782
effective search space: 19035466
effective search space used: 19035466
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)