GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002810-TA|BGIBMGA002810-PA|undefined
         (218 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  
AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4 p...    21   7.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 5   SQADSSWKKMVIAKTNNEWKSSVGEDAN 32
           S  +  W+    + +NN W ++ G ++N
Sbjct: 358 SSDEQQWRNNQPSTSNNRWHNNNGNNSN 385


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 76   EMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLA 120
            E  P+  L+   +RR    G  S  +   +A   K  AY  QR++
Sbjct: 1383 ENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFRKKSLAYVQQRMS 1427


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 76   EMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLA 120
            E  P+  L+   +RR    G  S  +   +A   K  AY  QR++
Sbjct: 1383 ENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFRKKSLAYVQQRMS 1427


>AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4
           protein.
          Length = 23

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 90  RRKGSGPKSETSEERAARL 108
           R +G G + ETS  R  RL
Sbjct: 4   RNRGDGGRPETSSGRRRRL 22


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.119    0.318 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,360
Number of Sequences: 317
Number of extensions: 1189
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 218
length of database: 114,650
effective HSP length: 54
effective length of query: 164
effective length of database: 97,532
effective search space: 15995248
effective search space used: 15995248
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)