GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002809-TA|BGIBMGA002809-PA|undefined
         (131 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    28   0.41 
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   0.95 
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    27   1.3  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    26   1.7  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   2.2  
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...    25   3.8  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   3.8  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   5.1  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    25   5.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    24   6.7  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    24   6.7  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    24   6.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    24   6.7  
SPBC1709.09 |||mitochondrial translation termination factor|Schi...    24   8.9  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    24   8.9  
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    24   8.9  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    24   8.9  

>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 0.41
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 94  EKLSDV-DPQKVNKFIEFLKRFSANLKEGVQDAKKQLK 130
           +++ DV DP+    ++  +  FS+N++EG + +  QLK
Sbjct: 224 QQIQDVQDPETRKDYMNAINNFSSNVQEGAKQSFTQLK 261


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 0.95
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 56  RVLELQKRLEIAKAQKIAESYPVRRAAQL-AVSVFYRGKEKLSDVDPQKVNKFIEFLKRF 114
           R L  QKRL + + QK+ +S   ++ + + AV +     EK   ++ +K    IE+ +  
Sbjct: 468 RRLSNQKRLRLLRLQKLKDSQERKKVSAIRAVKLMKEIVEKKQKLEMEKGGLVIEYAEYR 527

Query: 115 SANLKEGVQDAKKQL 129
             N      D K+ +
Sbjct: 528 VVNCGANEPDLKQDV 542


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 48  RESHECSHRVLELQKRLEIAKAQKIAESYPVRRAAQLAVSVFYRGKEKL--SDVDPQKVN 105
           RE +EC+ ++ ELQ +LE+      A +   RRA  L   +      KL  S+VD     
Sbjct: 305 RERNECNAKIDELQDKLELLTD---AYNREKRRARSLEERMSKEMLTKLGESNVDDGMAA 361

Query: 106 KFIEFLKRFSANLKEGVQDAKKQ 128
              + +KR    L E ++  ++Q
Sbjct: 362 SRYDTVKREKERLSEHLKSLQEQ 384


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 1   MENNTDHSEQTNYSPLTVEDVDVDFLPIVYDIIRSVERDFHDNA--------SKIRESHE 52
           M  N    E+T   P        D +  V D+I S+++DF D          S   +  E
Sbjct: 545 MSENLSSKEKTAVPP---RQKSRDIIASVTDVISSLDKDFQDEMAAKQSMIDSAYTQLRE 601

Query: 53  CSHRVLELQKRLEIAKAQKIAESYPVRRAAQLAVSVFYRGKEKLSDV 99
            + ++ +L+++L +++ Q+       +R   L  S+    K +LS++
Sbjct: 602 STKKLSDLREQLHVSETQRTLFLELRQRCKNLMTSI-EEQKSELSNL 647


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 89  FYRGKEKLSDVDPQKVNKFIEFLKR 113
           F+R K KLS V+P  +   + F K+
Sbjct: 203 FFREKVKLSTVEPSAIKNLVLFAKK 227


>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 61 QKRLEIAKAQKIAESYPVRRAAQLAVSVFYRGKEKL 96
          +KR EI   +K+   YP+R   ++ V  F RG ++L
Sbjct: 7  EKRPEIVGPEKVQSPYPIRFEGKV-VHGFGRGSKEL 41


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 16  LTVEDVDVDFLPIVYDIIRSVERDF----HDNASKIRESHECSHRVLELQKRLEIAKAQK 71
           L V D+ V F  +   +I  +E  F    HD A  +R      ++  ++   L  A++ +
Sbjct: 184 LLVGDLLVLFKAVNIGVINVLEHYFEMGHHDAAQSLRIYKTFVNQTEDIINYLSTARSLE 243

Query: 72  IAESYPVRRAAQLAVSVFYRGKEKLSDVDPQKVNKFIEFLKRFSANLKE--GVQDAKKQL 129
               +PV       +S+    +E L+D D ++  K  ++L+  S +  E   + + K  L
Sbjct: 244 FVTKFPVPNIKHAPISLTASLEEYLNDPDFEENRK--QYLQNKSGSPVEETAILNRKPTL 301

Query: 130 KK 131
           +K
Sbjct: 302 RK 303


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 13  YSP-LTVEDVDVDFLPIVYDIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQK 71
           YSP LT     +D++ + YD +  +         K  ES +   +++ +  R+ I   Q+
Sbjct: 293 YSPCLTKFPATIDYISLHYDFLGQISSHLSSYKEKFEESSKNFEKLVIMSLRVFILVIQE 352

Query: 72  IAES 75
              +
Sbjct: 353 FCNT 356


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 96  LSDVDPQKVNKFIEFLKRFSANLKEGVQD 124
           LS    + +++F++ L+  S  LKEGVQ+
Sbjct: 47  LSRSQAKTISEFMDILQNGSNTLKEGVQN 75


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 31  DIIRSVERDFHDNASKIRESHECSHRVLELQKR 63
           DII   ER+  +   ++RE  E   + +EL  R
Sbjct: 929 DIIPLTEREKFEEEDRLREEEEALKQEIELSSR 961


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 3   NNTDHSEQTNYSPLTVEDVDVD 24
           +N DH  Q NYSP   +  D D
Sbjct: 106 SNWDHIRQENYSPDIPDGYDTD 127


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 85  AVSVFYRGKEKLSDVDPQKVN 105
           A S+FYR K+K+ + D  + N
Sbjct: 869 ASSLFYRPKDKIMEADKARAN 889


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 42  DNASKIRESHECSHRVLELQKRLEIAKAQKIAESYPVRRAAQLAV 86
           + AS  R+S E S    + QK++E+AK  K ++   V    Q+ V
Sbjct: 271 ETASSKRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTV 315


>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 91  RGKEKLSDVDPQKVNKFIEFLKRFSANLK 119
           + K+   D DP+  N F + LK F A ++
Sbjct: 39  KDKDVKHDHDPEFANSFNKMLKSFEAKMQ 67


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 21  VDVDFLPIVYDIIRSVERDFHDN--ASKIRESHECSHRVLELQK--RLEIAKAQKIAESY 76
           +++D L    D   S+ R   +   A   R++ E   RVL   K  +  + +   +  S 
Sbjct: 280 IEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVGGST 339

Query: 77  PVRRAAQLAVSVFYRGKEKLSDVDPQK 103
            + R  +L VS F+ GKE    ++P +
Sbjct: 340 RIPRVQKL-VSDFFNGKEPCKSINPDE 365


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 48  RESHECSHRVLELQKRLEIAKAQKIAESYPVRRAAQLAVSVFY 90
           +  H     +   +   EIA A+ +A ++P+R    L  SVFY
Sbjct: 142 KRQHSADQSLEGYKAASEIATAE-LAPTHPIRLGLALNFSVFY 183


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 9   EQTNYSPLTVEDVDVDFLPIVYDIIRSVERDFHDNASKIRES 50
           E+   +  ++ED+++D +P V  ++  V  D     S  +ES
Sbjct: 323 EEFEENRFSIEDIEIDSIPAVRRLLGDVMSDIPYYMSHHKES 364


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 585,611
Number of Sequences: 5004
Number of extensions: 21596
Number of successful extensions: 93
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 17
length of query: 131
length of database: 2,362,478
effective HSP length: 66
effective length of query: 65
effective length of database: 2,032,214
effective search space: 132093910
effective search space used: 132093910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)