Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002809-TA|BGIBMGA002809-PA|undefined
(131 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166 29 1.2
01_06_1711 - 39351056-39351063,39351161-39351350,39351509-393516... 28 2.1
10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874 28 2.8
09_02_0051 - 3606453-3606473,3606562-3606957,3608250-3608419,360... 28 2.8
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 28 2.8
11_04_0470 - 18092681-18092695,18092725-18092811,18093528-180935... 27 3.7
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 27 4.9
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 26 8.6
>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
Length = 983
Score = 29.1 bits (62), Expect = 1.2
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 33 IRSVERDFHDNASKIRES--HECSHRVLELQKRLEIAKA--QKIAESYPVRRAAQ 83
IR V H+ A ES C + E ++ LE A+A QK+AES +R AAQ
Sbjct: 695 IREVTLAAHEAACAEEESALRLCEDTLTERERALEEAEAAAQKLAESASLREAAQ 749
>01_06_1711 -
39351056-39351063,39351161-39351350,39351509-39351662,
39352288-39352406,39352449-39352593,39353050-39353160,
39353966-39354093,39354646-39354774,39354868-39354915,
39355084-39355278,39355406-39355408,39355540-39355668,
39355755-39355913
Length = 505
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 84 LAVSVFYRGKEKLSDVDPQKVNKFIEFLKRFSAN--LKEGVQDAKKQL 129
+AV V + G EKL VD + + F FL+++ N L ++ +KQ+
Sbjct: 175 VAVKVQHPGAEKLMMVDIRNMQAFALFLQKYDINFDLYSATKEMEKQI 222
>10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874
Length = 118
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 2 ENNTDHSEQTNYSPLTVEDVDVDFLPIVYDIIRSVERDFHDNASKIRESHE 52
E+ TD E + +PL +E+ D + ++ D + + H + +K+R + E
Sbjct: 4 EDGTDRRELSTAAPLLLEEEDEERQELMEDDEGDEQEEHHHHGAKLRTTAE 54
>09_02_0051 -
3606453-3606473,3606562-3606957,3608250-3608419,
3609654-3610707
Length = 546
Score = 27.9 bits (59), Expect = 2.8
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 30 YDIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQKIAESYPVRRAAQLAVSVF 89
+D ++ E +F + +K S ++LE Q+ + +AK E +R A LAV +F
Sbjct: 58 FDDLKRQEEEFEETVAK-------SEQMLEQQEAVVVAKELTSLEKLQQKRDAALAV-IF 109
Query: 90 YRGKEKLSDVDPQKVNKFIEFLKRFSANL 118
+ K LS ++K + F+ N+
Sbjct: 110 GKSKLNLSTPLINPISKSVNNNAVFNGNI 138
>03_05_0728 -
27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 27.9 bits (59), Expect = 2.8
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 45 SKIRESHECSHRVLELQKRLEIAKAQKIAESYPVRRAAQLAVSVFYRGKEKLSDVDPQKV 104
+K +E + + ++Q+++E AKA + E R+A + A V + D +K+
Sbjct: 905 AKAQEIAKLQETLHDMQQQVEEAKAMIVKEREAARKAIEEAPPVIKETPVLVEDT--EKI 962
Query: 105 NKF---IEFLKRFSANLKEGVQDAKKQ 128
N +E LK ++ + AKK+
Sbjct: 963 NSLTAEVEQLKALLQTERQATETAKKE 989
>11_04_0470 -
18092681-18092695,18092725-18092811,18093528-18093593,
18093696-18093740,18093850-18093903,18093987-18094082,
18094161-18094241,18095634-18095714,18095798-18095884,
18095976-18096074,18096644-18096769,18098162-18098248,
18098321-18098389,18098711-18098806,18099053-18099169,
18099710-18099790,18099873-18100010,18100307-18100580,
18100735-18100830,18101612-18101757,18102883-18103141,
18103434-18103537,18103623-18103748,18103872-18103982,
18104200-18104304
Length = 881
Score = 27.5 bits (58), Expect = 3.7
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 25 FLPIVYDIIRSVERDFHDNASKIRESHECS-HRVLELQKRLEIAKAQKIAESYPVRRAAQ 83
FL +VY +++ E D + + E C H +L L + Q I + + +
Sbjct: 192 FLEMVYKVVKFCENDLRQSTLESIEMQFCDLHSLLRLMLPFLLQLLQCIHSLWRGQISGS 251
Query: 84 LAVSVFYRGKEKLSDVDPQ--KVNKFIEFLKRFSANL 118
L K K+SD D Q K K +E ++ N+
Sbjct: 252 LP-DQLESAKSKMSDEDVQQNKTRKLLEEIRLSGYNI 287
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 27.1 bits (57), Expect = 4.9
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 25 FLPIVYDIIRSVERDFHDNASKIRESHECSHRVLELQ-----KRLEIAKAQKIAESYPVR 79
F P V ++ + F D +RES EC+ R + Q +L + K E R
Sbjct: 1374 FEPYVIQMLPLLLVSFSDQVLAVRESAECAARAMMSQLTGHGVKLVLPSLLKGLEDKAWR 1433
Query: 80 ---RAAQLAVSVFYRGKEKLSDVDPQKVNKFIEFLKRFSANLKEGVQDAKKQL 129
+ QL ++ Y ++LS P+ V K E L ++ Q A +Q+
Sbjct: 1434 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQAAGQTALQQV 1486
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 26.2 bits (55), Expect = 8.6
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 33 IRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQKIAESYPVRRAAQLAVSVFYRG 92
+R E D D + E E R +ELQ++ + A A A + A + V G
Sbjct: 559 LREKEEDLADKLREEEEIAEARRRAVELQQQADEAAAAAAAAAVVAESATVMEVD-GDDG 617
Query: 93 KEKLSDVDPQKVNKFIEFLKRFSANLKEGVQDAKKQL 129
KE+ + P V+ + F+ + GV + K +
Sbjct: 618 KERDAQDKPAVVD--VGNNDAFANGVDSGVNNGKDNI 652
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,148
Number of Sequences: 37544
Number of extensions: 108352
Number of successful extensions: 315
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 8
length of query: 131
length of database: 14,793,348
effective HSP length: 74
effective length of query: 57
effective length of database: 12,015,092
effective search space: 684860244
effective search space used: 684860244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)
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