GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002809-TA|BGIBMGA002809-PA|undefined
         (131 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   4.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   4.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   7.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 64  LEIAKAQKIAESYPVRRAAQLAVSVFYRGKEKLSDVDPQKVNK 106
           L +AK +K ++  P+    +   ++ Y      SDV+ ++V+K
Sbjct: 297 LTLAKMEKTSKPLPMVDNPESTGNLVYIYNNPFSDVEERRVSK 339


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 93  KEKLSDVDPQKVNKFIEFLKRFSANLKEG 121
           K+K   V    V+K  +FL+ F  NL  G
Sbjct: 94  KDKYKQVFLGGVDKNTQFLRYFVGNLASG 122


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 93  KEKLSDVDPQKVNKFIEFLKRFSANLKEG 121
           K+K   V    V+K  +FL+ F  NL  G
Sbjct: 94  KDKYKQVFLGGVDKNTQFLRYFVGNLASG 122


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 45  SKIRESHECSHRVLEL 60
           SKI+ES+ CS+  L +
Sbjct: 453 SKIKESNSCSNDQLPM 468


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/26 (23%), Positives = 15/26 (57%)

Query: 3   NNTDHSEQTNYSPLTVEDVDVDFLPI 28
           NN +++   NY  L    ++++ +P+
Sbjct: 339 NNYNNNNYNNYKKLYYNIINIEQIPV 364


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,758
Number of Sequences: 429
Number of extensions: 1468
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 131
length of database: 140,377
effective HSP length: 51
effective length of query: 80
effective length of database: 118,498
effective search space:  9479840
effective search space used:  9479840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)