GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002808-TA|BGIBMGA002808-PA|IPR012089|PP-loop ATPase,
YdaO-related, IPR000719|Protein kinase, IPR000541|Protein of unknown
function UPF0021, IPR011063|PP-loop
         (338 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.8  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   3.8  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   3.8  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   3.8  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   3.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   5.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   5.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   5.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.6  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 250 TDKKTSKTCK---NISNGFKQKECNATNCCTNKTERNVEKNNEK 290
           T+++TSK  K   ++SN +K    N  N   N    N   NN K
Sbjct: 71  TERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYK 114


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 250 TDKKTSKTCK---NISNGFKQKECNATNCCTNKTERNVEKNNEK 290
           T+++TSK  K   ++SN +K    N  N   N    N   NN K
Sbjct: 71  TERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYK 114


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 252 KKTSKTCKNISNGFKQKECNATNCCTNKTERNVEKNNEKLQTVLDKYSLENNS 304
           ++  K+ KN  N +++    +     ++TER   K  + + ++ + Y+  NN+
Sbjct: 277 EREQKSYKN-ENSYRKYRETSKERSRDRTERERSKERKIISSLSNNYNYNNNN 328


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 309 DEEDSDDSEIKHQDEDDTCSSS 330
           D+++SD+  IK Q E    SSS
Sbjct: 89  DDDESDNENIKSQKEFPNSSSS 110


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 224 KKLLDEYNTRQN---NLETAVKDLEDCNITDKKTSKTCKNISNGFKQ----KECNATNCC 276
           +KLL+E  +R+    + E   K  ++ N + +K  +T K  S   K+    KE    +  
Sbjct: 27  EKLLEERTSRKRYSRSREREKKSYKNEN-SYRKYRETSKERSRDRKERERSKEPKIISSL 85

Query: 277 TNKTERNVEKNNEKLQ 292
           +NKT  N   N +KLQ
Sbjct: 86  SNKTIHNNNNNYKKLQ 101


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 224 KKLLDEYNTRQN---NLETAVKDLEDCNITDKKTSKTCKNISNGFKQ----KECNATNCC 276
           +KLL+E  +R+    + E   K  ++ N + +K  +T K  S   K+    KE    +  
Sbjct: 27  EKLLEERTSRKRYSRSREREKKSYKNEN-SYRKYRETSKERSRDRKERERSKEPKIISSL 85

Query: 277 TNKTERNVEKNNEKLQ 292
           +NKT  N   N +KLQ
Sbjct: 86  SNKTIHNNNNNYKKLQ 101


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 224 KKLLDEYNTRQN---NLETAVKDLEDCNITDKKTSKTCKNISNGFKQ----KECNATNCC 276
           +KLL+E  +R+    + E   K  ++ N + +K  +T K  S   K+    KE    +  
Sbjct: 27  EKLLEERTSRKRYSRSREREKKSYKNEN-SYRKYRETSKERSRDRKERERSKEPKIISSL 85

Query: 277 TNKTERNVEKNNEKLQ 292
           +NKT  N   N +KLQ
Sbjct: 86  SNKTIHNNNNNYKKLQ 101


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 224 KKLLDEYNTRQN---NLETAVKDLEDCNITDKKTSKTCKNISNGFKQ----KECNATNCC 276
           +KLL+E  +R+    + E   K  ++ N + +K  +T K  S   K+    KE    +  
Sbjct: 27  EKLLEERTSRKRYSRSREREKKSYKNEN-SYRKYRETSKERSRDRKERERSKEPKIISSL 85

Query: 277 TNKTERNVEKNNEKLQ 292
           +NKT  N   N +KLQ
Sbjct: 86  SNKTIHNNNNNYKKLQ 101


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 224 KKLLDEYNTRQN---NLETAVKDLEDCNITDKKTSKTCKNISNGFKQ----KECNATNCC 276
           +KLL+E  +R+    + E   K  ++ N + +K  +T K  S   K+    KE    +  
Sbjct: 260 EKLLEERTSRKRYSRSREREKKSYKNEN-SYRKYRETSKERSRDRKERERSKEPKIISSL 318

Query: 277 TNKTERNVEKNNEKLQ 292
           +NKT  N   N +KLQ
Sbjct: 319 SNKTIHNNNNNYKKLQ 334


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 291 LQTVLDKYSLENNSQVKLDEEDSDDS 316
           +QTV  K  LE N  +KLD    D +
Sbjct: 65  VQTVRFKNELERNITIKLDTRAEDST 90


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/61 (21%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 267 QKECNATNCCTNKTERNVEK-NNEKLQTVLDKYSLENNSQVKLDEEDSDDSEIKHQDEDD 325
           ++ C+       + +R  EK +NEK + + ++ + + NS+ +  E++S  +E +++   +
Sbjct: 1   ERSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRE 60

Query: 326 T 326
           T
Sbjct: 61  T 61


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/61 (21%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 267 QKECNATNCCTNKTERNVEK-NNEKLQTVLDKYSLENNSQVKLDEEDSDDSEIKHQDEDD 325
           ++ C+       + +R  EK +NEK + + ++ + + NS+ +  E++S  +E +++   +
Sbjct: 1   ERSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRE 60

Query: 326 T 326
           T
Sbjct: 61  T 61


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 307 KLDEEDSDDSEIKHQDEDDTCSSSCGRLGVG 337
           ++DE+D DD +    D+DD   ++ G+   G
Sbjct: 388 EVDEDDDDDGD---DDDDDDVEAANGKPAEG 415


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 82  NLMLLSIDEGITGYRDDSL 100
           N+M   +D+GI G+R D++
Sbjct: 214 NIMKFWLDKGIDGFRIDAV 232


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 195 TTEVCKACVLLEGLNKGLPKLGIGKSSKVKKLLDEYNTR 233
           TT+      LL G  KG+ +      + V  L D YNT+
Sbjct: 207 TTDHPSVAYLLVGSLKGIARQFYNDDANVYILPDPYNTK 245


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,010
Number of Sequences: 429
Number of extensions: 4833
Number of successful extensions: 24
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 16
length of query: 338
length of database: 140,377
effective HSP length: 58
effective length of query: 280
effective length of database: 115,495
effective search space: 32338600
effective search space used: 32338600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)