GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002806-TA|BGIBMGA002806-PA|IPR001406|tRNA pseudouridine
synthase
         (241 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    22   4.9  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    21   8.5  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.5  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   8.5  

>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 181 IGKLQPDDVKVMLQIPSKHSWHSFIQNCPSDGLYLCEVEYD 221
           + K Q   +   + +  ++ W+  +     DG+Y  + E D
Sbjct: 91  VQKKQAGKILTFVLLNYRNEWNQLVAKYDPDGIYRKQYEID 131


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 169 IRRMVGTLISVAIGKLQPDDVKVMLQIPSKH 199
           I R+ G+ I    G   P D  V LQI   H
Sbjct: 365 ISRVSGSEIQTKTGYTIPKDCMVNLQIYDMH 395


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 192 MLQIPSKHSWHSFIQNCPSDGL 213
           +L +   H+  S +QN PSD +
Sbjct: 17  LLTLKLTHALSSSVQNFPSDAI 38


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 169 IRRMVGTLISVAIGKLQPDDVKVMLQIPSKH 199
           I R+ G+ I    G   P D  V LQI   H
Sbjct: 365 ISRVSGSEIQTKTGYTIPKDCMVNLQIYDMH 395


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,211
Number of Sequences: 317
Number of extensions: 2313
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 241
length of database: 114,650
effective HSP length: 55
effective length of query: 186
effective length of database: 97,215
effective search space: 18081990
effective search space used: 18081990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)