GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002806-TA|BGIBMGA002806-PA|IPR001406|tRNA pseudouridine
synthase
         (241 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    34   0.021
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    32   0.065
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    31   0.15 
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    30   0.26 
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    29   0.80 
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    27   1.9  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    27   2.5  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   3.2  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   4.3  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    26   5.7  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    26   5.7  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   9.9  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   9.9  

>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 10/116 (8%)

Query: 64  VVIPENVSIANVIPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHK 123
           +VIP    +   +   E+      R+ E  ++  ++  K  EG H+F  F   D      
Sbjct: 244 IVIPPQAKLKKALKQAEYYCYMNYRIKEDRLKVLQQLLKKYEGRHNFHNFTVTDDSTSPS 303

Query: 124 HNRRELKSVTIRAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISV 179
            N R ++SVT   G P V  + E       +  +   G +F+ NQIR+M+  ++ +
Sbjct: 304 -NYRFIESVT--CGTPFVYENWE-------WIPVTIKGNSFMLNQIRKMMAHVLMI 349


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 32.3 bits (70), Expect = 0.065
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)

Query: 93  DIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKPVVTAHTESRGSAF 152
           DI++  E A    G HDF  F K D   Q  +  R + S  +    P    +      AF
Sbjct: 222 DIDRMNEAAALYLGEHDFRNFCKIDASKQITNYHRRILSSKVICIDPSTGLY------AF 275

Query: 153 DYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQP----DDVKVMLQIPSK 198
           D       G AF+ +Q+R M+  L  +   KL+P    +D+  + ++P+K
Sbjct: 276 D-----LQGTAFLWHQVRCMMAILFLIG-QKLEPASLINDLLDIKKVPTK 319


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 12/19 (63%), Positives = 17/19 (89%)

Query: 159 FHGRAFVHNQIRRMVGTLI 177
           FHG++F+ +QIR+MVG LI
Sbjct: 273 FHGQSFMKHQIRKMVGILI 291


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 88  RLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKPVVTAHTES 147
           R++   +   +E      G H+F  F    +    K++ R ++S T  A  P +   TE 
Sbjct: 315 RISADRLSVIRETLNQYVGVHNFHNFT-VGQAFHQKNSNRVIRSFT--ASDPFMIGDTE- 370

Query: 148 RGSAFDYWDIEFHGRAFVHNQIRRMVGTLISV 179
                 +   + HG++F+ +QIR+M+   I V
Sbjct: 371 ------WISCKVHGQSFMLHQIRKMIALAILV 396


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 4   TLDKDTATKKSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRLAV-LKK 62
           T+   TA    S+ +W           +  G++ L+++    +   N+  SSR+A    +
Sbjct: 319 TVVDQTAVVTGSDSMWATYLSQCLPKRAALGILSLTIVSSFLMGQSNLIASSRIAYSYAR 378

Query: 63  DVVIPENVSIANVIPV 78
           D V+P +  +A V P+
Sbjct: 379 DGVLPYSEWVATVNPI 394


>SPBC1703.08c |||5-formyltetrahydrofolate
          cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 47 NYPNVTLSSRLAVLKKDVVIPENVSIAN-VIPVEEWKRC 84
          N     L+S L  L   ++  +++SI   V+ + EWKRC
Sbjct: 6  NQLRAILNSSLGKLADHIIDSQSISICKQVVELPEWKRC 44


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 7   KDTATKKSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRLAVLKKDVVI 66
           K   T+  SE+  +KE R+  DP+ +  +    L K+    +P +TL+    V  +D+ +
Sbjct: 34  KQWLTEIESEQTNIKEERDPIDPQEIYDL----LAKINDPEHP-LTLAQLSVVKLEDIEV 88

Query: 67  PENVSIANVIPV 78
            +NV   + I V
Sbjct: 89  VDNVEGDSYITV 100


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 37  ELSLLKLRSLNYPNVTLSSRLAVLKKDVVIPENVSIANVIPVEEWKRCHFIRLAEFD--I 94
           +L + K R LNY  +  S  L   +KD+V     S + +I +E+W +   + L EF+  +
Sbjct: 257 DLEICK-RFLNY--LCCSFSLTKAEKDLVRATEFSNSMLISIEKWAKYCDVDLQEFEKKL 313

Query: 95  EKFKEGAKHLEGYHDFST 112
           +KF +    L+ Y +  +
Sbjct: 314 QKFWKNFGTLKLYSNIES 331


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 190 KVMLQIPSKHSWHSFIQNCPSDGLYLCEVEY 220
           K+   +PS +   SFI N P + L+L +  Y
Sbjct: 426 KLFTDLPSNNELFSFIHNIPKEFLHLSDSTY 456


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 168 QIRRMVGTLISVAIGKLQPDDVKVMLQIPSKHSWHSFIQNCPSDGLYLCEVEYDPKDLFY 227
           Q ++    L S++   L  +  +  +++ ++HS+ +F+Q  P    Y+ +V Y+P  L +
Sbjct: 417 QQQQQFSALQSISNNALNENIEQPPIKMAARHSYPNFLQTLPQ---YMNDV-YNPSGLAF 472

Query: 228 DP 229
           +P
Sbjct: 473 NP 474


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 144 HTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQIPSKHSWHS 203
           H ES     D    E H R F    I     +LI      L   D+++  + P  +  H 
Sbjct: 301 HKESTDKDLDQDMAELHRRIFWVCYIFETTTSLIFGTPPVL--GDLEIECKYPDINYAHC 358

Query: 204 FIQNCPSDGLYLCEV 218
           F +N   D ++ CE+
Sbjct: 359 FAENVQGDLIFTCEI 373


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 190 KVMLQIPSKHSWHSFIQ--NCPSDGLYLCEVEYDPKDLFYDPDTTVESETL 238
           + +L +   H+ H   +     S G ++  V +  K L  DP  TVE+ +L
Sbjct: 350 RTVLTVNLSHTLHDIYEAVRAVSPGNFILSVPFPAKTLEDDPSVTVEAASL 400


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 163 AFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQI 195
           AF + Q+RR+V +LI   + KLQ   +KV+ Q+
Sbjct: 382 AFENRQLRRLVFSLIQAQLEKLQL-KMKVLEQL 413


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 153 DYWDIEFHGRAFVHNQI 169
           DYW+ EF  R FV  ++
Sbjct: 204 DYWEGEFRARGFVEGEL 220


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,159,224
Number of Sequences: 5004
Number of extensions: 47573
Number of successful extensions: 132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 14
length of query: 241
length of database: 2,362,478
effective HSP length: 71
effective length of query: 170
effective length of database: 2,007,194
effective search space: 341222980
effective search space used: 341222980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)