Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002806-TA|BGIBMGA002806-PA|IPR001406|tRNA pseudouridine
synthase
(241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0596 + 4867388-4867405,4869095-4869151,4869624-4869701,487... 42 6e-04
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404... 36 0.039
05_03_0280 - 11553011-11553052,11553810-11553872,11554304-115546... 33 0.27
12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763... 32 0.36
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654... 31 0.63
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 29 3.4
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 29 3.4
05_03_0279 - 11547086-11547246,11547591-11547807,11549132-11549275 29 4.5
04_03_0919 + 20820010-20821707 29 4.5
11_06_0181 + 20985960-20987825,20987904-20989169 28 5.9
>12_01_0596 +
4867388-4867405,4869095-4869151,4869624-4869701,
4870467-4870549,4870775-4870874,4871384-4871659,
4872198-4872258,4872365-4872465
Length = 257
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 162 RAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQIPSKHSWHSFIQNCPSDGLYLCEVEYD 221
R+F+++Q+R MVG L SV G L +DV+ +L + + + P+ GLYL V+YD
Sbjct: 198 RSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVTAAPPM---APACGLYLANVKYD 254
>03_03_0156 +
14939355-14939435,14939559-14939624,14940331-14940414,
14940796-14940875,14941313-14941358,14941456-14941566,
14942224-14942290,14942615-14942630,14942871-14942931,
14943015-14943145,14943243-14943360,14944053-14944176,
14944517-14944618,14944717-14944785,14946250-14946329
Length = 411
Score = 35.5 bits (78), Expect = 0.039
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 91 EFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKPVVTAHTESRGS 150
+ +I + ++ A G HD+ F K D + RR + I A + R +
Sbjct: 200 DLNISEMQKAALKFIGEHDYRNFCKMDAANVSNY-RRHITDFNISA--------YDQRSN 250
Query: 151 AFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQI 195
+ W I G AF+ +Q+R MV L + G P V +L I
Sbjct: 251 YDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLETPCIVDSLLDI 295
>05_03_0280 -
11553011-11553052,11553810-11553872,11554304-11554666,
11554805-11554944,11556267-11556336
Length = 225
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 95 EKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKPVVTAHTESRGSAFDY 154
+ +E AKH G HDF++F HN R + K ++ G+
Sbjct: 149 QAMREAAKHFVGTHDFTSF------ANAVHNDRVRSPI-----KKIMRFDVIEMGAIL-- 195
Query: 155 WDIEFHGRAFVHNQIRRMVGTLISVAI 181
+E G F++ Q+R M G+ ++V I
Sbjct: 196 -QLEIEGTGFLYRQVRNMAGSSLAVVI 221
>12_01_0826 -
7629892-7629964,7630052-7630135,7630216-7630314,
7630391-7630449,7630804-7630888,7630961-7631058,
7631209-7631355,7631433-7631525,7631642-7631770,
7631859-7631912,7632133-7632309,7632396-7632481,
7634234-7634324,7634433-7634531,7634618-7634694,
7634784-7634952,7639551-7639642,7639712-7639825,
7640933-7641038,7641133-7641183,7641315-7641416,
7642581-7642655,7642768-7642965,7642998-7643123
Length = 827
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 58 AVLKKDVVIPENVSIANVIPVEEWKRCHFIRLAEFDIEKFKEGAKHLE 105
A+L K ++ P S+AN+ P+EE H++R+ +K KE AK L+
Sbjct: 379 AILDKLLIKP---SLANLPPIEEGGLLHYLRVLAVAYDKTKELAKELQ 423
>03_02_0938 -
12563250-12563681,12564098-12564514,12565333-12565477,
12565574-12565722,12565836-12565948,12566423-12566458,
12566558-12566816
Length = 516
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 150 SAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVML 193
S + ++ G +F+ +QIR+MVGT ++V G L D + + L
Sbjct: 355 SGIQFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSL 398
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 13 KSSEKIWLKENR--NLPDPESVQGMMELSLLKLRSLNYPNV 51
K+ + + LK+ R NL DPESV+ M +L LR LN+PNV
Sbjct: 205 KTGKIVALKKVRFVNL-DPESVR-FMAREILVLRKLNHPNV 243
>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 96 KFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRREL-KSVTIRAGKPVVTAHTESRG 149
K EG + L GY FS ++ +L+Q K R EL K + + +P + +E +G
Sbjct: 1864 KTGEGIEMLGGYLHFSAPRRIIELIQEKRLRGELDKLLQRKIEEPALDIFSEGKG 1918
>05_03_0279 - 11547086-11547246,11547591-11547807,11549132-11549275
Length = 173
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 173 VGTLISVAIGKLQPDDVKVMLQIPSKHSWHSFIQNCPSDGLYLCEVEYDPKDLFYDPD 230
V L+ V L PD V ++ + + P GLYL V YD K++ P+
Sbjct: 49 VALLLQVGREALPPDIVAKIIAARDRKELAKVALSAPPHGLYLMSVNYD-KEMLQPPE 105
>04_03_0919 + 20820010-20821707
Length = 565
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 165 VHNQIRRMVGTLISVAIG-KLQPDDVKVMLQI--PSKHSWHSFIQNCPSDGLYLCEVEY 220
+ N R+M G +I VAIG + + ++L I SK W + Q P DG+ + Y
Sbjct: 206 LQNSQRKMSGKIIGVAIGASIGVLFLMILLLIVWKSKGKWFACTQEKPEDGIGITAFRY 264
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 7 KDTATKKSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRLAVLKKDVVI 66
++ A + SS +I L + + +S GM ++ + R P+ + SS + DV +
Sbjct: 297 EENAAESSSLQI-LGKRKLYVTSDSSHGMNS-NIKRQRKYTCPSDSDSSNEQICNDDVAV 354
Query: 67 PENVSIANVIPVE 79
P+N S +P+E
Sbjct: 355 PDNQSTGQNVPIE 367
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,963,331
Number of Sequences: 37544
Number of extensions: 272621
Number of successful extensions: 629
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 10
length of query: 241
length of database: 14,793,348
effective HSP length: 80
effective length of query: 161
effective length of database: 11,789,828
effective search space: 1898162308
effective search space used: 1898162308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -