GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002806-TA|BGIBMGA002806-PA|IPR001406|tRNA pseudouridine
synthase
         (241 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034304-1|AAH34304.1|  303|Homo sapiens pseudouridylate synthas...    74   4e-13
AL139287-3|CAI23172.1|  303|Homo sapiens pseudouridylate synthas...    74   4e-13
AK075292-1|BAC11527.1|  303|Homo sapiens protein ( Homo sapiens ...    74   4e-13
BC004822-1|AAH04822.1|  481|Homo sapiens pseudouridylate synthas...    37   0.073
AK055702-1|BAB70990.1|  481|Homo sapiens protein ( Homo sapiens ...    37   0.073

>BC034304-1|AAH34304.1|  303|Homo sapiens pseudouridylate
           synthase-like 1 protein.
          Length = 303

 Score = 74.1 bits (174), Expect = 4e-13
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 76  IPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIR 135
           +PV E   C  +     D+   +E A+HL G HDFS F+     +          SV+  
Sbjct: 144 LPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPG 203

Query: 136 AGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQI 195
              P+VT   ESR   F  W++EF  ++F++ Q+RRM   L++V +G L P  VK +L+ 
Sbjct: 204 QASPLVTPE-ESRKLRF--WNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILES 260

Query: 196 PSKHSWHSFIQNCPSDGLYLCEVEY 220
                 H   +  P+ GL+L  V Y
Sbjct: 261 QDPLGKHQ-TRVAPAHGLFLKSVLY 284


>AL139287-3|CAI23172.1|  303|Homo sapiens pseudouridylate
           synthase-like 1 protein.
          Length = 303

 Score = 74.1 bits (174), Expect = 4e-13
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 76  IPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIR 135
           +PV E   C  +     D+   +E A+HL G HDFS F+     +          SV+  
Sbjct: 144 LPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPG 203

Query: 136 AGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQI 195
              P+VT   ESR   F  W++EF  ++F++ Q+RRM   L++V +G L P  VK +L+ 
Sbjct: 204 QASPLVTPE-ESRKLRF--WNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILES 260

Query: 196 PSKHSWHSFIQNCPSDGLYLCEVEY 220
                 H   +  P+ GL+L  V Y
Sbjct: 261 QDPLGKHQ-TRVAPAHGLFLKSVLY 284


>AK075292-1|BAC11527.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90811 fis, clone Y79AA1000888, weakly similar to
           TRNA PSEUDOURIDINE SYNTHASE A (EC 4.2.1.70). ).
          Length = 303

 Score = 74.1 bits (174), Expect = 4e-13
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 76  IPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIR 135
           +PV E   C  +     D+   +E A+HL G HDFS F+     +          SV+  
Sbjct: 144 LPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPG 203

Query: 136 AGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQI 195
              P+VT   ESR   F  W++EF  ++F++ Q+RRM   L++V +G L P  VK +L+ 
Sbjct: 204 QASPLVTPE-ESRKLRF--WNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILES 260

Query: 196 PSKHSWHSFIQNCPSDGLYLCEVEY 220
                 H   +  P+ GL+L  V Y
Sbjct: 261 QDPLGKHQ-TRVAPAHGLFLKSVLY 284


>BC004822-1|AAH04822.1|  481|Homo sapiens pseudouridylate synthase 3
           protein.
          Length = 481

 Score = 36.7 bits (81), Expect = 0.073
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 85  HFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKPVVTAH 144
           +F   A+ DI      A+   G HDF    K D      + +R + S  ++    V  + 
Sbjct: 197 YFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQL---VGQSP 253

Query: 145 TESRGSA-FDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQI 195
            E R    F     E  G+AF+++Q+R M+  L  +  G  +P+ +  +L I
Sbjct: 254 GEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNI 305


>AK055702-1|BAB70990.1|  481|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31140 fis, clone IMR322001218, highly similar to
           Mus musculus pseudouridine synthase 3 (Pus3) mRNA. ).
          Length = 481

 Score = 36.7 bits (81), Expect = 0.073
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 85  HFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKPVVTAH 144
           +F   A+ DI      A+   G HDF    K D      + +R + S  ++    V  + 
Sbjct: 197 YFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQL---VGQSP 253

Query: 145 TESRGSA-FDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQI 195
            E R    F     E  G+AF+++Q+R M+  L  +  G  +P+ +  +L I
Sbjct: 254 GEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNI 305


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,998,141
Number of Sequences: 224733
Number of extensions: 1348549
Number of successful extensions: 3070
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3062
Number of HSP's gapped (non-prelim): 5
length of query: 241
length of database: 73,234,838
effective HSP length: 88
effective length of query: 153
effective length of database: 53,458,334
effective search space: 8179125102
effective search space used: 8179125102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)