Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002806-TA|BGIBMGA002806-PA|IPR001406|tRNA pseudouridine
synthase
(241 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014296-26|ABI31225.1| 306|Drosophila melanogaster CG34140-PA,... 109 3e-24
AY058376-1|AAL13605.1| 499|Drosophila melanogaster GH14326p pro... 38 0.016
AE013599-3349|AAF46811.1| 499|Drosophila melanogaster CG3045-PA... 38 0.016
AY118427-1|AAM48456.1| 666|Drosophila melanogaster RH14727p pro... 33 0.47
AF145637-1|AAD38612.1| 802|Drosophila melanogaster BcDNA.GH0728... 33 0.47
AE014135-220|AAZ52485.1| 1135|Drosophila melanogaster CG33653-PC... 33 0.47
AE014135-219|AAN06591.4| 1529|Drosophila melanogaster CG33653-PA... 33 0.47
AY058698-1|AAL13927.1| 604|Drosophila melanogaster LD41750p pro... 32 0.62
AE014296-1556|AAF50341.1| 604|Drosophila melanogaster CG5064-PA... 32 0.62
AF223578-1|AAF34697.1| 1349|Drosophila melanogaster secretion ca... 29 5.8
AE014135-218|AAN06590.4| 1445|Drosophila melanogaster CG33653-PB... 29 5.8
AE014297-2825|AAF55785.1| 410|Drosophila melanogaster CG4159-PA... 29 7.6
>AE014296-26|ABI31225.1| 306|Drosophila melanogaster CG34140-PA,
isoform A protein.
Length = 306
Score = 109 bits (263), Expect = 3e-24
Identities = 54/162 (33%), Positives = 91/162 (56%), Gaps = 5/162 (3%)
Query: 69 NVSIANVIPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNR-- 126
N S IPVEE RC+F++ + FDI++ + A+ G HDF TF + + +
Sbjct: 145 NRSFETFIPVEEIDRCYFLQSSSFDIKRVQAAARMFIGVHDFRTFMSVSRQKVCRDHPMF 204
Query: 127 --RELKSVTIRAGKP-VVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGK 183
R++ + IR G+ ++++ ++YWDIE ++F++ Q+RR+VG LI++ G+
Sbjct: 205 TVRKIDEINIRPGETRALSSNAIQAAETYNYWDIEIRAKSFLYKQVRRIVGALIALGNGR 264
Query: 184 LQPDDVKVMLQIPSKHSWHSFIQNCPSDGLYLCEVEYDPKDL 225
+ + ML +PSK+SW + P+ GLYLC V Y D+
Sbjct: 265 IDERCLYQMLTVPSKNSWDHRVLLAPACGLYLCRVHYRETDI 306
>AY058376-1|AAL13605.1| 499|Drosophila melanogaster GH14326p
protein.
Length = 499
Score = 37.5 bits (83), Expect = 0.016
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 85 HFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKPVVTAH 144
++ + DI ++ L + DF F K D + R L+S + A T H
Sbjct: 227 YYFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEACDQ--TNH 284
Query: 145 TESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQIPS 197
T S +D + +E AF+ +QIR ++ L+ V K P + +L + S
Sbjct: 285 TNS---GYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKENPGVISDLLDVES 334
>AE013599-3349|AAF46811.1| 499|Drosophila melanogaster CG3045-PA
protein.
Length = 499
Score = 37.5 bits (83), Expect = 0.016
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 85 HFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKPVVTAH 144
++ + DI ++ L + DF F K D + R L+S + A T H
Sbjct: 227 YYFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEACDQ--TNH 284
Query: 145 TESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQIPS 197
T S +D + +E AF+ +QIR ++ L+ V K P + +L + S
Sbjct: 285 TNS---GYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKENPGVISDLLDVES 334
>AY118427-1|AAM48456.1| 666|Drosophila melanogaster RH14727p
protein.
Length = 666
Score = 32.7 bits (71), Expect = 0.47
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 10 ATKKSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRL-AVLKKDVVIPE 68
AT E++ +K+ PE V+ M++ SL +NY ++ +++ L+ DV++P
Sbjct: 406 ATLSLLERVLMKDIVTPVPPEEVRQMIKKSLETAALVNYTRLSNKAKIDEDLRGDVIVPA 465
Query: 69 NVSIANVIPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRE 128
+ ++I + E C + L + + E + E KH D K D+ + HN E
Sbjct: 466 PKKLEDLIHLAE--LC--VDLLQQNEEHYGELRKH--DKMDKKKLLKEDEDVSGGHNESE 519
Query: 129 ---LKSVTIRAGKPVVTAHTESRGSAFDY 154
+ S + + + TA + GS+F Y
Sbjct: 520 VDLIDSTGLISASELATA-ASTDGSSFRY 547
>AF145637-1|AAD38612.1| 802|Drosophila melanogaster BcDNA.GH07283
protein.
Length = 802
Score = 32.7 bits (71), Expect = 0.47
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 10 ATKKSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRL-AVLKKDVVIPE 68
AT E++ +K+ PE V+ M++ SL +NY ++ +++ L+ DV++P
Sbjct: 148 ATLSLLERVLMKDIVTPVPPEEVRQMIKKSLETAALVNYTRLSNKAKIDEDLRGDVIVPA 207
Query: 69 NVSIANVIPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRE 128
+ ++I + E C + L + + E + E KH D K D+ + HN E
Sbjct: 208 PKKLEDLIHLAE--LC--VDLLQQNEEHYGELRKH--DKMDKKKLLKEDEDVSGGHNESE 261
Query: 129 ---LKSVTIRAGKPVVTAHTESRGSAFDY 154
+ S + + + TA + GS+F Y
Sbjct: 262 VDLIDSTGLISASELATA-ASTDGSSFRY 289
>AE014135-220|AAZ52485.1| 1135|Drosophila melanogaster CG33653-PC,
isoform C protein.
Length = 1135
Score = 32.7 bits (71), Expect = 0.47
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 10 ATKKSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRL-AVLKKDVVIPE 68
AT E++ +K+ PE V+ M++ SL +NY ++ +++ L+ DV++P
Sbjct: 875 ATLSLLERVLMKDIVTPVPPEEVRQMIKKSLETAALVNYTRLSNKAKIDEDLRGDVIVPA 934
Query: 69 NVSIANVIPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRE 128
+ ++I + E C + L + + E + E KH D K D+ + HN E
Sbjct: 935 PKKLEDLIHLAE--LC--VDLLQQNEEHYGELRKH--DKMDKKKLLKEDEDVSGGHNESE 988
Query: 129 ---LKSVTIRAGKPVVTAHTESRGSAFDY 154
+ S + + + TA + GS+F Y
Sbjct: 989 VDLIDSTGLISASELATA-ASTDGSSFRY 1016
>AE014135-219|AAN06591.4| 1529|Drosophila melanogaster CG33653-PA,
isoform A protein.
Length = 1529
Score = 32.7 bits (71), Expect = 0.47
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 10 ATKKSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRL-AVLKKDVVIPE 68
AT E++ +K+ PE V+ M++ SL +NY ++ +++ L+ DV++P
Sbjct: 875 ATLSLLERVLMKDIVTPVPPEEVRQMIKKSLETAALVNYTRLSNKAKIDEDLRGDVIVPA 934
Query: 69 NVSIANVIPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRE 128
+ ++I + E C + L + + E + E KH D K D+ + HN E
Sbjct: 935 PKKLEDLIHLAE--LC--VDLLQQNEEHYGELRKH--DKMDKKKLLKEDEDVSGGHNESE 988
Query: 129 ---LKSVTIRAGKPVVTAHTESRGSAFDY 154
+ S + + + TA + GS+F Y
Sbjct: 989 VDLIDSTGLISASELATA-ASTDGSSFRY 1016
>AY058698-1|AAL13927.1| 604|Drosophila melanogaster LD41750p
protein.
Length = 604
Score = 32.3 bits (70), Expect = 0.62
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 20 LKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRLAVLKKDVVIPENVSIANVIPVE 79
L+ +N+ D + V+ L +L + NVT ++ L+ D V N+
Sbjct: 380 LQSQQNVGDGKRVRPQ---DLARLYEIILQNVTEMQQINGLEDDATYQSEVE--NLAITF 434
Query: 80 EWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKP 139
+ RC++I L DI+K+KE E +++T K + ELK V
Sbjct: 435 KAFRCYYIALTLIDIKKWKEAVALYERASNYATEALKGKSSPEFQLQEELKKVVSAIDGC 494
Query: 140 VVTAHTES 147
+AH S
Sbjct: 495 KFSAHAYS 502
>AE014296-1556|AAF50341.1| 604|Drosophila melanogaster CG5064-PA
protein.
Length = 604
Score = 32.3 bits (70), Expect = 0.62
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 20 LKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRLAVLKKDVVIPENVSIANVIPVE 79
L+ +N+ D + V+ L +L + NVT ++ L+ D V N+
Sbjct: 380 LQSQQNVGDGKRVRPQ---DLARLYEIILQNVTEMQQINGLEDDATYQSEVE--NLAITF 434
Query: 80 EWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKP 139
+ RC++I L DI+K+KE E +++T K + ELK V
Sbjct: 435 KAFRCYYIALTLIDIKKWKEAVALYERASNYATEALKGKSSPEFQLQEELKKVVSAIDGC 494
Query: 140 VVTAHTES 147
+AH S
Sbjct: 495 KFSAHAYS 502
>AF223578-1|AAF34697.1| 1349|Drosophila melanogaster secretion
calcium-dependent activatorprotein protein.
Length = 1349
Score = 29.1 bits (62), Expect = 5.8
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 10 ATKKSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRL-AVLKKDVVIPE 68
AT E++ +K+ PE V+ M++ SL +NY ++ +++ L+ DV++P
Sbjct: 862 ATLSLLERVLMKDIVTPVPPEEVRQMIKKSLETAALVNYTRLSNKAKIDEDLRGDVIVPA 921
Query: 69 NVSIANVIPVEE 80
+ ++I + E
Sbjct: 922 PKKLEDLIHLAE 933
>AE014135-218|AAN06590.4| 1445|Drosophila melanogaster CG33653-PB,
isoform B protein.
Length = 1445
Score = 29.1 bits (62), Expect = 5.8
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 10 ATKKSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRL-AVLKKDVVIPE 68
AT E++ +K+ PE V+ M++ SL +NY ++ +++ L+ DV++P
Sbjct: 860 ATLSLLERVLMKDIVTPVPPEEVRQMIKKSLETAALVNYTRLSNKAKIDEDLRGDVIVPA 919
Query: 69 NVSIANVIPVEE 80
+ ++I + E
Sbjct: 920 PKKLEDLIHLAE 931
>AE014297-2825|AAF55785.1| 410|Drosophila melanogaster CG4159-PA
protein.
Length = 410
Score = 28.7 bits (61), Expect = 7.6
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 94 IEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGKPVVTAHTESRGSAFD 153
++K KE K EG +F F L ++R + S T + +P + +
Sbjct: 213 LQKVKETLKLYEGTKNFHNFTSKKSFLDPS-SKRFIMSFT--SSEPFRSPQD------IE 263
Query: 154 YWDIEFHGRAFVHNQIRRMVGTLISVAIG 182
+ ++ G++F+ +QIR+MVG I++ G
Sbjct: 264 FVTLKVKGQSFMLHQIRKMVGLAIAIVRG 292
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,760,533
Number of Sequences: 52641
Number of extensions: 468868
Number of successful extensions: 1040
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1035
Number of HSP's gapped (non-prelim): 13
length of query: 241
length of database: 24,830,863
effective HSP length: 83
effective length of query: 158
effective length of database: 20,461,660
effective search space: 3232942280
effective search space used: 3232942280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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