Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002806-TA|BGIBMGA002806-PA|IPR001406|tRNA pseudouridine
synthase
(241 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197-9|AAK95894.1| 322|Caenorhabditis elegans Hypothetical ... 48 5e-06
Z47075-5|CAA87378.1| 402|Caenorhabditis elegans Hypothetical pr... 38 0.005
AF100659-8|AAC68966.1| 688|Caenorhabditis elegans Hypothetical ... 29 2.3
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 29 3.0
AL021572-2|CAA16518.1| 415|Caenorhabditis elegans Hypothetical ... 29 4.0
AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical ... 28 5.2
AF038615-2|AAB94145.1| 782|Caenorhabditis elegans Hypothetical ... 28 5.2
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z92788-9|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z92788-6|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z92788-4|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z92788-3|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z92788-2|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z68115-2|CAA92167.1| 914|Caenorhabditis elegans Hypothetical pr... 27 9.2
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 27 9.2
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 27 9.2
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 27 9.2
>AC084197-9|AAK95894.1| 322|Caenorhabditis elegans Hypothetical
protein Y73B6BL.29 protein.
Length = 322
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 152 FDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQIP-SKHSWHSFIQNCPS 210
+DY+++ ++FV QIRRM+ L++ + ++ ++ +L P S + + I P
Sbjct: 234 YDYYNVTIVAKSFVREQIRRMMSCLVNYSYDRIPLTTIEWLLSNPISSNFFDLGIPVAPP 293
Query: 211 DGLYLCEVEYDPKDLFYDPD 230
GL+L +V YDP+ +F +P+
Sbjct: 294 QGLFLTDVVYDPR-MFTNPE 312
>Z47075-5|CAA87378.1| 402|Caenorhabditis elegans Hypothetical
protein E02H1.3 protein.
Length = 402
Score = 38.3 bits (85), Expect = 0.005
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 90 AEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTIRAGK-PVVTAHTESR 148
A+ ++EK ++GA+ L G HDFS F + D + +R L+S + + V T
Sbjct: 174 ADLNLEKMRQGAELLVGEHDFSNFCQID-----MNEKRLLQSYVRKVYEVKVEQVSTHPE 228
Query: 149 GSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQI 195
+ ++ G F+ + IR +V L + QP + +L +
Sbjct: 229 NDMYSMVELTVSGSGFLWHMIRYIVTILQEIGRENEQPSLISQLLDL 275
>AF100659-8|AAC68966.1| 688|Caenorhabditis elegans Hypothetical
protein F58E2.3 protein.
Length = 688
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 31 SVQGMMELSLLKLRSLNYPNVTLSSRLAVLKKDVVIPENVSIANVIPVEEWKRCHFI 87
S+Q + + +L++L SL P+ + + LK D++ +++ + +++WK I
Sbjct: 509 SIQVLNQETLIQLLSLLRPSSLKTIEIRKLKNDIISKKSLKLNEAAQLDQWKNAEDI 565
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 29.1 bits (62), Expect = 3.0
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 15 SEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSRLAVLKKDVVIPENVSIAN 74
+ +++LKEN + PE Q ++ L L L++ R VL V++P N + N
Sbjct: 101 NREMYLKENLHT-FPEERQTKAKIEYLGLSLLDFQT---ELRKKVLATTVLVPPNDFLIN 156
Query: 75 VIPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQHKHNRRELKSVTI 134
+ K + L E + + +H + K + + H R L +
Sbjct: 157 PWSIRRTKYEYLQELKRHPDRAILEKRRKVTNFHFLQSLTKHAREFKEFHKRNMLNHTKV 216
Query: 135 R 135
R
Sbjct: 217 R 217
>AL021572-2|CAA16518.1| 415|Caenorhabditis elegans Hypothetical
protein W06H3.2 protein.
Length = 415
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 153 DYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKVMLQIPSKHSWHSFIQNCPSDG 212
++ I G++FV +QIR+MVG +I+V I +L +K +Q S I P G
Sbjct: 234 EFVQIVIKGQSFVLHQIRKMVGMVITV-IRELH---LKSSIQ-RSFEGQRMDIPMAPGLG 288
Query: 213 LYLCEVEYDPKD 224
L L YD D
Sbjct: 289 LLLERTHYDSYD 300
>AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical
protein K07D4.6 protein.
Length = 389
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 3 TTLDKDTATKKSSEKIWLKENRNLPDPESVQGMMELSLLK 42
TT T+T S + +W+K P P++ +G + + K
Sbjct: 310 TTTTTTTSTTTSDDLLWVKITTTPPPPDTTEGRLSFEIEK 349
>AF038615-2|AAB94145.1| 782|Caenorhabditis elegans Hypothetical
protein R02D3.4 protein.
Length = 782
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 71 SIANVIPVEEWKRCHFIRLAEFDIEKFKEGAKHLEGYHDFSTFKKFDKLLQ 121
S+ N+ +E R F+ LA+ ++ KH E Y + T DKLL+
Sbjct: 563 SVRNLKDPDEQLRVTFVELAKHIMKYVTFSEKHKEIYKTYMTTLNVDKLLE 613
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2304 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2353
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2316 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2365
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2202 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2251
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2203 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2252
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2285 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2334
>Z92788-9|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2304 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2353
>Z92788-6|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2316 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2365
>Z92788-4|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2202 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2251
>Z92788-3|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2203 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2252
>Z92788-2|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2285 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2334
>Z68115-2|CAA92167.1| 914|Caenorhabditis elegans Hypothetical
protein F19H6.3 protein.
Length = 914
Score = 27.5 bits (58), Expect = 9.2
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 16 EKIWLKENRNLPDPESVQGMMELS-LLKLRSLNYPNVTLSSRLAVLKK-DVVIPENVSIA 73
++I + E N+P+PE + S LL +S Y + S K D ++P+ V +
Sbjct: 506 QQIPVVEASNIPEPEHAMNVRNSSPLLDNQSAPYNSFFYPSLANCRDKVDRILPKLVKLC 565
Query: 74 NVIPVEEWKRC----------HFIRLAEFDIEKFKEGAKHLEG 106
V+ KR F L++FDIEKF K + G
Sbjct: 566 TKTCVDSAKRSLMVVVVKTIGDFASLSKFDIEKFTWIKKRVAG 608
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2316 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2365
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2316 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2365
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 135 RAGKPVVTAHTESRGSAFDYWDIEFHGRAFVHNQIRRMVGTLISVAIGKLQPDDVKV 191
+ G+PVV T+S W+ + FV N + ++A GK+ P+D+ V
Sbjct: 2316 QVGQPVVEESTQS-------WEFDTQQGVFVDNLTGEKLSLERALATGKVAPEDISV 2365
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,156,961
Number of Sequences: 27539
Number of extensions: 251798
Number of successful extensions: 595
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 22
length of query: 241
length of database: 12,573,161
effective HSP length: 79
effective length of query: 162
effective length of database: 10,397,580
effective search space: 1684407960
effective search space used: 1684407960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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