GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002805-TA|BGIBMGA002805-PA|undefined
         (61 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    19   3.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    19   3.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    19   3.9  

>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 2   CADREKEKAIFITRSQARESPGLSESIPPLV-PDAT 36
           C++++KE + FI R      P   +++     PD T
Sbjct: 80  CSEKQKEGSDFIMRYLIDNKPDYWKALEAKYDPDGT 115


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross
          protein.
          Length = 314

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 11 IFITRSQARESPGLSESIPPLVPDA 35
          + IT+S  R  P L+  I  L P A
Sbjct: 39 MIITKSGRRMFPALNLKITDLDPSA 63


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 13/60 (21%), Positives = 23/60 (38%)

Query: 2   CADREKEKAIFITRSQARESPGLSESIPPLVPDATDAASDETPALDGCGAEEPLLRRRRV 61
           CA + KEK     + +   +   S  +  + P+ +D+         G   E+  L  R V
Sbjct: 264 CAVKRKEKKAQKEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSKGISPEQEELIHRLV 323


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,941
Number of Sequences: 317
Number of extensions: 390
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 61
length of database: 114,650
effective HSP length: 41
effective length of query: 20
effective length of database: 101,653
effective search space:  2033060
effective search space used:  2033060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.3 bits)
S2: 34 (17.8 bits)