GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002805-TA|BGIBMGA002805-PA|undefined
         (61 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   0.90 
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    24   2.7  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    24   2.7  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    23   3.6  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    22   8.4  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    22   8.4  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 0.90
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 5   REKEKAIFITRSQARE----SPGLSESIPPLVPDATDAASDETP 44
           ++ +K+IF  R++  E    SP L E     +PD  D+    TP
Sbjct: 288 QKAQKSIFEVRARVAEIFKDSPDLLEEFKLFLPDNVDSTEPSTP 331


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 17   QARESPGLSESIPPLVPDATDAAS 40
            +    PG SE++ P++ D +DA +
Sbjct: 1093 EGTNQPGASENVEPVLADDSDAVT 1116


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 27  SIPPLVPDATDAASDETPALDGCGAEE 53
           S  P  PD+ DAA+   P L  C  +E
Sbjct: 159 SCHPSFPDSADAANVHCPVLFLCSKDE 185


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 21  SPGLSESIPPLVPDATDAASDETP 44
           +P + E I P  PD  +  S+ETP
Sbjct: 101 TPIVEEPIVPEEPDNLEGVSEETP 124


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 20  ESPGLSESIPPLVPDATDAASD 41
           ES GLS+  P + P+A D   D
Sbjct: 497 ESNGLSQKSPIVDPEAPDLLED 518


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 13  ITRSQARESPGLSESIPPLVP 33
           ITRSQ    P   E IP + P
Sbjct: 522 ITRSQVSREPEKPEEIPSVPP 542


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,148
Number of Sequences: 5004
Number of extensions: 7596
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 61
length of database: 2,362,478
effective HSP length: 42
effective length of query: 19
effective length of database: 2,152,310
effective search space: 40893890
effective search space used: 40893890
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)