GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002805-TA|BGIBMGA002805-PA|undefined
         (61 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26716| Best HMM Match : Shugoshin_C (HMM E-Value=7.5)               27   2.2  
SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)           27   2.2  
SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)                     26   3.8  
SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)                      26   3.8  
SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  
SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)                   26   5.0  
SB_51726| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)                   26   5.0  
SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  
SB_42398| Best HMM Match : CaMBD (HMM E-Value=6.2)                     25   6.7  
SB_37909| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_8845| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.2)            25   6.7  

>SB_26716| Best HMM Match : Shugoshin_C (HMM E-Value=7.5)
          Length = 243

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 14  TRSQARESPGLSESIPPLVPDATDAASDETPALDGCGAEEPLLRRRRV 61
           T  QAR S  L+    PL+P AT+ A   TP++       P LRR ++
Sbjct: 184 TPKQARSSVNLNSQTTPLIP-ATERALRRTPSVT---YTMPSLRREKM 227


>SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)
          Length = 440

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 30 PLVPDATD-AASDETPALDGCGAEEPLL 56
          P V + TD A ++E PA +G  A+EP++
Sbjct: 70 PAVAEITDKAVTEEEPAAEGAVADEPVI 97


>SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 14  TRSQARESPGLSESIPPLVPDATDAASDETPALDGCGAEEPLLRRRRV 61
           T + A  +    E+  PLVP+A  A+ +   + +   ++E  LRRRR+
Sbjct: 208 TTTTAPSTADSKETTSPLVPEAVGASPEAADSAEDEASQE--LRRRRL 253


>SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)
          Length = 751

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 19 RESPGLS-ESIPPLVPDATDAA 39
          +E+P L+ ES P  +PDATD A
Sbjct: 59 KETPNLALESAPAAMPDATDTA 80


>SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)
          Length = 754

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 19 RESPGLS-ESIPPLVPDATDAA 39
          +E+P L+ ES P  +PDATD A
Sbjct: 59 KETPNLALESAPAAMPDATDTA 80


>SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1607

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 18   ARESPGLSESIP--PLVPDATDAASDETPALDGCGAEE 53
            AR + GL+ ++   PLV D T    D+    DG G ++
Sbjct: 1188 ARNAAGLNTTVEALPLVVDTTPPQGDQRSVYDGDGGDD 1225


>SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)
          Length = 1699

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 18   ARESPGLSESIP--PLVPDATDAASDETPALDGCGAEE 53
            AR + GL+ ++   PLV D T    D+    DG G ++
Sbjct: 1134 ARNAAGLNTTVEALPLVVDTTPPQGDQRSVYDGDGGDD 1171


>SB_51726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 23 GLSESIPPL-VPDATDA---ASDETPALDGCGAEEPL 55
          G+SE   PL + D TD    A DE+PA++  G E PL
Sbjct: 56 GVSEFDNPLYMLDETDIQRIAPDESPAIEPPGVENPL 92


>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
          Length = 515

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 11  IFITRSQARESPGLSESIPPLVPDATDAASDETPALDGCGA 51
           IF+ +SQ   SP    + PP   + +  A+  TP +   G+
Sbjct: 267 IFLCKSQGPPSPSAGPTKPPRSVNQSADATSSTPTMPQAGS 307


>SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 6/38 (15%)

Query: 3   ADREKEKAIFITRSQARESPGLS-ESIPPLVPDATDAA 39
           ADR  E  I +     +E+P L+ ES P  +PDATD A
Sbjct: 101 ADRRSEPLIPL-----KETPTLALESAPAAMPDATDTA 133


>SB_42398| Best HMM Match : CaMBD (HMM E-Value=6.2)
          Length = 159

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 21  SPGLSESIPPLVPDATDAA 39
           +PGL ES P  +PDATD A
Sbjct: 104 TPGL-ESAPAAMPDATDTA 121


>SB_37909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 21  SPGLSESIPPLVPDATDAA 39
           +PGL ES P  +PDATD A
Sbjct: 87  TPGL-ESAPAAMPDATDTA 104


>SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 21  SPGLSESIPPLVPDATDAA 39
           +PGL ES P  +PDATD A
Sbjct: 240 TPGL-ESAPAAMPDATDTA 257


>SB_8845| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.2)
          Length = 490

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 21  SPGLSESIPPLVPDATDAA 39
           +PGL ES P  +PDATD A
Sbjct: 175 TPGL-ESAPAAMPDATDTA 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,886
Number of Sequences: 59808
Number of extensions: 61446
Number of successful extensions: 183
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 14
length of query: 61
length of database: 16,821,457
effective HSP length: 40
effective length of query: 21
effective length of database: 14,429,137
effective search space: 303011877
effective search space used: 303011877
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)