GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002805-TA|BGIBMGA002805-PA|undefined
         (61 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    23   1.4  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    20   7.5  
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    20   9.9  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    20   9.9  

>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 18  ARESPGLSESIPPLVPDATDAASDETPALDGCGAEEPLLRRR 59
           A  + G S S PP +P A+ + +  T        ++ L  +R
Sbjct: 157 AAAAAGASASTPPTIPSASPSPTRSTDLSQTYAIDDELSSKR 198


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 3    ADREKEKAIFITRSQARESPGLSESIPPL 31
            A+RE+E +I +   +A E+    E+ PP+
Sbjct: 1094 AEREREDSILMAAVRAEEA---GEAPPPI 1119


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 28  IPPLVPDATDAASDETPAL 46
           +PP   ++   AS+ TPAL
Sbjct: 642 VPPPRTNSQSQASEPTPAL 660


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 20  ESPGLSESIPPLVPDATDAASDETPALD 47
           + P  SE  PP  PD  D   +     D
Sbjct: 703 DRPAGSELTPPGPPDEKDVCGENEDNFD 730


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,516
Number of Sequences: 2123
Number of extensions: 1575
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 61
length of database: 516,269
effective HSP length: 40
effective length of query: 21
effective length of database: 431,349
effective search space:  9058329
effective search space used:  9058329
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)