Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002804-TA|BGIBMGA002804-PA|IPR001452|Src homology-3,
IPR000219|DH, IPR000108|Neutrophil cytosol factor 2
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0613 - 19232706-19232822,19232936-19233010,19233132-192332... 42 0.001
04_04_0656 - 26988766-26988830,26989311-26989371,26989514-269895... 41 0.002
03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879... 40 0.002
07_03_0542 - 19256688-19256804,19257181-19257255,19257337-192574... 38 0.009
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 38 0.012
01_06_1617 - 38678668-38678925,38679015-38679117,38680629-38681290 32 0.60
03_03_0280 - 16166962-16167393,16167646-16167770,16168305-161686... 29 7.4
02_02_0224 - 8033098-8034552 28 9.7
>10_08_0613 -
19232706-19232822,19232936-19233010,19233132-19233287,
19233412-19233549,19233571-19233771,19233985-19234086,
19234960-19235111,19235213-19235282,19235416-19235532,
19235674-19235733
Length = 395
Score = 41.5 bits (93), Expect = 0.001
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 268 ALYAYAAAQPDELSLAEGDVVNVTRKTAEGWYYGERTRDGEAGWFPGAY 316
A+ +Y A EL+LA GD + V + + GW GE G+AGWFP Y
Sbjct: 333 AIQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECR--GKAGWFPYDY 379
>04_04_0656 -
26988766-26988830,26989311-26989371,26989514-26989588,
26989694-26989849,26989975-26990061,26990140-26990340,
26990942-26991043,26991223-26991374,26991488-26991557,
26991646-26991765,26992708-26992761
Length = 380
Score = 40.7 bits (91), Expect = 0.002
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 268 ALYAYAAAQPDELSLAEGDVVNVTRKTAEGWYYGERTRDGEAGWFP 313
AL ++ A EL+L+ GD+V V + + GW GE G+AGWFP
Sbjct: 315 ALDSFKAESESELNLSAGDIVIVRKISTNGWAEGE--CKGKAGWFP 358
>03_02_0481 +
8789890-8789949,8790325-8790441,8790532-8790601,
8790688-8790836,8791520-8791621,8791692-8791892,
8792589-8792651,8792791-8793009,8793681-8793755,
8794003-8794101,8794521-8794691
Length = 441
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 269 LYAYAAAQPDELSLAEGDVVNVTRKTAEGWYYGERTRDGEAGWFPGAY 316
++ + A ELS++ GD V V + GW GE G+AGWFP AY
Sbjct: 329 IHPFDAQADGELSISVGDYVVVRQVAPNGWSEGE--CKGKAGWFPSAY 374
>07_03_0542 -
19256688-19256804,19257181-19257255,19257337-19257426,
19257506-19257568,19257659-19257856,19257973-19258074,
19259276-19259424,19260136-19260205,19260460-19260582,
19261541-19261600
Length = 348
Score = 38.3 bits (85), Expect = 0.009
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 268 ALYAYAAAQPDELSLAEGDVVNVTRKTAEGWYYGERTRDGEAGWFPGAY 316
A++ + ELSL GD V V + GW GE G AGWFP AY
Sbjct: 286 AVHNFNGTTEKELSLIVGDYVVVRQIAPNGWAEGE--CKGVAGWFPAAY 332
>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 37.9 bits (84), Expect = 0.012
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 268 ALYAYAAAQPDELSLAEGDVVNVTRKTAEGWYYGERTRDGEAG 310
ALY + A DELSL G+ V + + +GWYY ++ R G G
Sbjct: 1089 ALYDFTAGGDDELSLTAGEDVEIEYE-VDGWYYVKKKRPGRDG 1130
>01_06_1617 - 38678668-38678925,38679015-38679117,38680629-38681290
Length = 340
Score = 32.3 bits (70), Expect = 0.60
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 216 SPGGGSSALAERRVLMSCGSETEVSRWREALWLPAAAPGEAVYAGWDCPQVCA 268
+P +A+ E RV + E V WR A P AA AV A W P + A
Sbjct: 47 APPAPEAAILEERVEVDVDVEAAVVPWRGAFLFPVAA---AVVASWPLPSLAA 96
>03_03_0280 -
16166962-16167393,16167646-16167770,16168305-16168645,
16171153-16171313
Length = 352
Score = 28.7 bits (61), Expect = 7.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 219 GGSSALAERRVLMSCGSETEVSRWREALWLPAAAPGEAVYAGW 261
GG S + RR L GS+ E S R+A + A PG + W
Sbjct: 35 GGDSRVGGRRRLAGGGSQREPSAQRQAGRISANGPGADLVPPW 77
>02_02_0224 - 8033098-8034552
Length = 484
Score = 28.3 bits (60), Expect = 9.7
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 269 LYAYAAAQPDELSLAEGDVVNVTRKTAEGWYYGERTRDGEAGWFPGAYSAEIASPHVRAR 328
+YAY + A+G +VN + G R RDGE G FP Y + P VR R
Sbjct: 200 VYAYVLEEGRRYGGADGFLVNSFPEMEPGAAEAFR-RDGENGAFPPVY---LVGPFVRPR 255
Query: 329 N 329
+
Sbjct: 256 S 256
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,762,027
Number of Sequences: 37544
Number of extensions: 368622
Number of successful extensions: 792
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 8
length of query: 351
length of database: 14,793,348
effective HSP length: 83
effective length of query: 268
effective length of database: 11,677,196
effective search space: 3129488528
effective search space used: 3129488528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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