Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002803-TA|BGIBMGA002803-PA|IPR000219|DH
(256 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 39 6e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.5
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 27 3.5
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 26 4.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.7
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 4.7
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 26 4.7
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 26 4.7
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 6.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 6.2
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 39.1 bits (87), Expect = 6e-04
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 117 RSSTPLCSVSSLAPAQKRLQEAKF---ELLTSEASYLNSLNVLESQFVAHPAFRDPHILP 173
+ S + SS+ P KR+++ EL+T+EA+YLN L ++ + ++ L
Sbjct: 291 KESLAMSEASSINPEYKRIKKRANLIKELVTTEAAYLNDLIAIQQSYGLR--VKECSALN 348
Query: 174 RDDWEILFSTILPVRKCSQLLMNEL----EKCWQENILLQGI----CD---IVRHHAEEH 222
D + +F I + + + L E W+ N+ Q I C+ I E
Sbjct: 349 PVDAQTVFGDIESLLTFTVEFHSRLYQAGEGSWRVNLDTQLIDPLPCNLGLIFLESLSEI 408
Query: 223 FQVYVKYCENQTLMVKALQRLRERPAFAT 251
Q+Y YC Q + K + + RE+PA A+
Sbjct: 409 GQIYTGYCNRQDSVFKIITKWREKPATAS 437
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 82 GVPGAQAPPPEPARPSAMALVSPRGPARTLWCESRRSSTPLCSVSSLAPAQK-RLQEAKF 140
GV GA PPP P P+ A G +R + P +SL QK +L+EA+
Sbjct: 769 GVAGAGPPPPPPPPPAVSA-----GGSRYYAPAPQAEPEPKIDETSLTEEQKIQLEEARK 823
Query: 141 ELLTSEASYLNSLNVLESQFVAHPAFRDPH 170
+ ++ ++ ++ + P+ RD H
Sbjct: 824 QRKAAD----DAARAAIEKYTSIPSLRDLH 849
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 107 PARTLWCESRRSSTPLCSVSSLAPAQKRLQEAKF-------ELLTSEASYLNSLNVLESQ 159
P R L CE P C S Q + + ++L S Y ++VL +
Sbjct: 414 PTRVLHCEKTCKPNPYCPTCSFVLLQLGVNDKNMTLRVLVDDILKSRLHYSEEVSVLNDK 473
Query: 160 FVAHPAFRD 168
+ P F D
Sbjct: 474 LIYDPDFDD 482
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 117 RSSTPLCSVSSLAPAQKRLQEAKFELLT-SEASYLNSLNVLESQFVAHPAFRD 168
RSS PL +SL+P R + L S AS L + L S+ HP D
Sbjct: 171 RSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDECHPPTSD 223
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 83 VPGAQAPPPEPARPSAMALVS--PRGPARTLWCESRRSSTPLCSVSSLAPAQKRLQEA 138
VP AP P P P + VS P P R + S + S L P R+ A
Sbjct: 245 VPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAA 302
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 154 NVLESQFVAHPAFRDPHILPRDDWEILFSTILPVR 188
N+L+ Q + + R H+LPR+ +LFS R
Sbjct: 265 NMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSER 299
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 89 PPPEPARPSAMALVSPRGPARTLWCESRRSSTPLCSVSSLAPAQK 133
P P A P +AL+ P R + + + T C ++++ P +K
Sbjct: 330 PEPNFATPEQLALLEKALPPRKIESAPKNAHTEECVLATVDPTEK 374
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 4.7
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 89 PPPEPARPSAMALVSPRGPARTLWCESRRSSTPLCSVSSLAPAQKRLQEAKFELLTSEAS 148
PPP L P T+W ++RR+ + L S R QE + + + E
Sbjct: 191 PPPAIREKIGRELNIPERSV-TIWFQNRRAKSKLIS---------RRQEEERQRILREQR 240
Query: 149 YLNSLNVLESQFVAH 163
L+SLN SQ AH
Sbjct: 241 ELDSLNQKVSQAFAH 255
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 187 VRKCSQLLMNELEKCWQENILLQGICDIVRH 217
+ K L + +LE E++LL IC IV H
Sbjct: 486 IYKACLLFLRKLEDVSSESVLLGDICGIVLH 516
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.2
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 94 ARPSAMALVSPRGPARTLWCESRRSSTPLCSVSSLAPAQKRLQEAKFELLTSEASYLNSL 153
AR S++ S G + W S+ SSL+ + Q EL+ E+ Y+ L
Sbjct: 425 ARNSSLEFTSLPGQSSDTWSIFWNISSLNSLPSSLSKREIARQNNIHELICKESDYVADL 484
Query: 154 NVLESQF 160
N L F
Sbjct: 485 NTLAELF 491
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.133 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,061,040
Number of Sequences: 5004
Number of extensions: 42143
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 16
length of query: 256
length of database: 2,362,478
effective HSP length: 71
effective length of query: 185
effective length of database: 2,007,194
effective search space: 371330890
effective search space used: 371330890
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
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