Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002803-TA|BGIBMGA002803-PA|IPR000219|DH
(256 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 43 2e-04
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 34 0.13
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0) 31 1.2
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006) 29 2.8
SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16) 28 8.6
SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 46.4 bits (105), Expect = 2e-05
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 126 SSLAPAQKRLQEAKFELLTSEASYLNSLNVLESQFVAHPAFRDPHILPRDDWEILFSTIL 185
SS A+KR A ELLTSE SY + LN+L S +++ R+ HI+ DD + +FS +
Sbjct: 215 SSEDTAEKRRTRAAEELLTSEMSYFSGLNMLISNYLS--PLRESHIISDDDIKRIFSNVE 272
Query: 186 PVRKCSQLLMNELEK---CWQENILLQG--ICDIVRHHAEEH 222
+ S+ ++++L+ W N + G + ++V+ E++
Sbjct: 273 SLAFISKEMVSKLQSRLAKWDVNTTIIGDVLLEMVKSKLEKN 314
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 135 LQEAKFELLTSEASYLNSLNVLESQFVAHP---AFRDPHILPRDDWEILFSTILPVRKCS 191
L EA FE++TSEASYL SLN+L S F+ P A ++ + +LF + V + S
Sbjct: 383 LPEAMFEVITSEASYLKSLNILGSHFMDSPELQADTAQSVVEKSQQRVLFGNVKGVLEAS 442
Query: 192 Q 192
+
Sbjct: 443 E 443
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 81 AGVPGAQAPPPEPARPSAMALVSPRGPARTLWCESRRSSTP 121
A VP A AP P PA PSA A +P + S RS+TP
Sbjct: 105 APVPAAAAPAPAPAAPSAAAAPAPVRSVPSTSPSSVRSATP 145
>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 31.9 bits (69), Expect = 0.53
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 132 QKRLQEAKFELLTSEASYLNSLNVLESQFVAHPAFRDPHILPRDDWEILFSTILP-VRKC 190
+KR K E+L +E SYL L+ L++ F R+ ++ + +++F L +R+
Sbjct: 439 EKRYLATK-EILVTEKSYLACLSTLKTAF--EEPMRESALIGSKEIDVIFPKELDHIRES 495
Query: 191 SQLLMNELE 199
L MNELE
Sbjct: 496 HTLFMNELE 504
>SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)
Length = 1663
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 141 ELLTSEASYLNSLNVLESQFVAHPAFRD-PHILPRDDWEILFSTILPVRKCSQLLM-NEL 198
EL+ +E Y+ SL + ++A + D P L + ++F I + + + + EL
Sbjct: 296 ELIQTEQDYVTSLGEVVDGYIAEFSKPDLPEELKGKE-RMVFGNIKQIYEWHKTVFCREL 354
Query: 199 EKCWQENILLQGICDIVRHHAEEHFQVYVKYCENQTLMVKALQRLRE 245
EKC L + AE Q+YV YC+N+ + +E
Sbjct: 355 EKCEDAPEKLASVF----LKAERRLQMYVIYCQNKPKSTALVHEFKE 397
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 72 GDSDSDGYEAGVPGAQAPPPEPARPSAMALVSPRGP 107
GD + G + GVPG + PP P P P+GP
Sbjct: 1058 GDIGAPGAD-GVPGPKGPPGPPGYPGFKGYRGPQGP 1092
>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
Length = 1382
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 90 PPEPARPSAMALVSPRGPARTLWCESRRSSTPLCSVSSLAPAQKRLQEAKFELLTSEASY 149
P + RPS MA+V R + E SST V+ L P L E++ + S
Sbjct: 1108 PTDKGRPSTMAVVRRPSSHREIKTEGSSSSTASAPVTGLEPLFTNL----VEIIVDQCSS 1163
Query: 150 LNSLNVLESQFVA 162
S +VL Q ++
Sbjct: 1164 PFSCSVLRYQMLS 1176
>SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 82 GVPGAQAPPPEPARPSAMALVSPRGPA-RTLWCESRRSSTPLCS 124
G PGA PPP PA A+ + PA L+ E ++ T + S
Sbjct: 130 GGPGAPPPPPPPAVVPPSAVTTDGKPATAALFSEINKAGTNIAS 173
>SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 70 ETGDSDSDGYEAGVPGAQAPPPEPARPSAMALVSPRG 106
+ G S + G+ G PG Q PP P A + P+G
Sbjct: 260 QAGTSGAPGFP-GAPGFQGPPGLDGMPGAPGMPGPQG 295
>SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16)
Length = 488
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 140 FELLTSEASYLNSLNVLESQFVAHPAFRDPHILPRDDWEILFSTILPVRKCSQLLMNELE 199
F + +S L+ L V +P +DPHI+P+ ++ S+I ++ C + E
Sbjct: 146 FSVFSSSCDELHDLASDILDGVLNPLSQDPHIVPKTS-SLVMSSIEKMQVCGIRSYSHQE 204
Query: 200 KC 201
+C
Sbjct: 205 RC 206
>SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 125 VSSLAPAQKRLQEAKFELLTSEASYLNSLNVLESQF 160
V +L+P Q R QEA +EL + E ++ L +++ +
Sbjct: 154 VQTLSPMQLRRQEAIYELSSGEEDVVSDLTMMQEVY 189
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.133 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,993,245
Number of Sequences: 59808
Number of extensions: 321164
Number of successful extensions: 1073
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 14
length of query: 256
length of database: 16,821,457
effective HSP length: 81
effective length of query: 175
effective length of database: 11,977,009
effective search space: 2095976575
effective search space used: 2095976575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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