GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002803-TA|BGIBMGA002803-PA|IPR000219|DH
         (256 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    28   0.30 
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    28   0.30 
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   1.6  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   2.8  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   4.9  
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          23   8.6  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   8.6  

>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 181 FSTILPVRKCSQLLMNELEKCWQENILLQGICDIVRHHAEEHFQVYVKYCENQTLMVKAL 240
           F T L V  CS   ++ +   WQ + ++ G+  I  H     F   V  C    L  +A 
Sbjct: 65  FLTFLVVTACSIYFISNVYIKWQSSPIIIGLNPIATHIRNIPFPA-VTICNMNQLRREAA 123

Query: 241 QRLRERPAFATALK 254
           +R+ +     T L+
Sbjct: 124 ERIEQNTLEQTVLQ 137


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 181 FSTILPVRKCSQLLMNELEKCWQENILLQGICDIVRHHAEEHFQVYVKYCENQTLMVKAL 240
           F T L V  CS   ++ +   WQ + ++ G+  I  H     F   V  C    L  +A 
Sbjct: 65  FLTFLVVTACSIYFISNVYIKWQSSPIIIGLNPIATHIRNIPFPA-VTICNMNQLRREAA 123

Query: 241 QRLRERPAFATALK 254
           +R+ +     T L+
Sbjct: 124 ERIEQNTLEQTVLQ 137


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)

Query: 82  GVPGAQAPPPEPARPSAMALVSPRG 106
           G+PG   PP     P A   V PRG
Sbjct: 394 GLPGIPGPPCVDGLPGAAGPVGPRG 418


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 185 LPVRKCSQLLMNELEKCWQENILLQGICDIVRH-HAEE 221
           LP +K  + L  +L+K  Q NI L  +   V H H E+
Sbjct: 405 LPTKKQHKQLQAQLDKLTQINIHLHALFSAVEHGHLEK 442


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 65  ESIYRETGDSDSDGYEAGVPGAQAPPPEPARPSAMAL 101
           E +  + GD    G   G+PG Q P   P +P    L
Sbjct: 458 EGMPGDKGDKGESG-SVGMPGPQGPRGYPGQPGPEGL 493



 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 72  GDSDSDGYEAGVPGAQAPPPEPAR 95
           G+    GY AG+PG +    EPAR
Sbjct: 196 GNPGPRGY-AGIPGTKGEKGEPAR 218


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 114 ESRRSSTPLCSVSSLAPA 131
           E  RS TPL +VS  +PA
Sbjct: 691 EDARSRTPLTAVSDYSPA 708


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 195  MNELEKCWQENILLQGICDIVRHHAEEHFQVYVKYCENQTL 235
            +N LE   +E+ +LQ +  ++R H      V+V+   N  +
Sbjct: 3320 INALEAEIKEDFILQRLQSVLREHCATDSSVHVRRNANSKI 3360


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.133    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,128
Number of Sequences: 2123
Number of extensions: 9503
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 12
length of query: 256
length of database: 516,269
effective HSP length: 63
effective length of query: 193
effective length of database: 382,520
effective search space: 73826360
effective search space used: 73826360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)